tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 295
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 4
Total tRNAs 299
Intron Summary (tRNAs with introns: 215)
Ala AGC
1
Ala CGC
4
Ala TGC
3
Gly GCC
18
Gly CCC
1
Gly TCC
4
Pro AGG
10
Pro CGG
3
Pro TGG
1
Thr AGT
9
Thr CGT
3
Val AAC
9
Val CAC
4
Ser CGA
1
Ser TGA
2
Ser GCT
7
Arg ACG
11
Arg TCG
3
Arg CCT
3
Arg TCT
2
Leu AAG
13
Leu TAG
1
Leu CAA
4
Leu TAA
1
Phe GAA
9
Lys TTT
2
Asp GTC
13
Glu CTC
16
Glu TTC
5
His GTG
7
Gln CTG
10
Gln TTG
2
Ile AAT
12
Ile TAT
1
Met CAT
7
Tyr GTA
8
Cys GCA
5
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 40153

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
13
GGC
 
CGC
4
TGC
3
20
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
18
CCC
2
TCC
4
24
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
11
GGG
 
CGG
3
TGG
2
16
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
10
GGT
 
CGT
4
TGT
2
16
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
13
GAC
 
CAC
5
TAC
1
19
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
 
CGA
3
TGA
2
ACT
 
GCT
7
 
 
 
 
22
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
12
GCG
 
CCG
2
TCG
3
 
 
 
 
CCT
3
TCT
3
23
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
13
GAG
 
CAG
5
TAG
1
 
 
 
 
CAA
4
TAA
1
24
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
9
 
 
 
 
9
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
8
 
 
 
 
8
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
15
TTT
3
18
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
13
 
 
 
 
13
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
16
TTC
5
21
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
7
 
 
 
 
7
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
10
TTG
2
12
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
12
GAT
 
 
 
TAT
1
13
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
8/7
 
 
15
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
8
 
 
 
 
8
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
6
 
 
6
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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