tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 11:29:17 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         210
Seqs w/at least 1 hit:  22
Bases read:             42968544 (x2 for both strands)
Bases in tRNAs:         11184
tRNAs predicted:        138
Av. tRNA length:        81
Script CPU time:        5.35 s
Scan CPU time:          226.36 s
Scan speed:             379.6 Kbp/sec

First pass search(es) ended: Wed Aug 23 11:30:40 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     138
Infernal-confirmed tRNAs:     137
Bases scanned by Infernal:  13944
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.15 s
Infernal CPU time:            91.89 s
Scan speed:               151.7 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 11:32:49 PDT 2017

Overall scan speed: 264625.4 bp/sec