tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 21:27:48 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         32
Seqs w/at least 1 hit:  10
Bases read:             32268578 (x2 for both strands)
Bases in tRNAs:         13136
tRNAs predicted:        141
Av. tRNA length:        93
Script CPU time:        3.16 s
Scan CPU time:          153.52 s
Scan speed:             420.4 Kbp/sec

First pass search(es) ended: Mon Aug 21 21:28:08 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     141
Infernal-confirmed tRNAs:     137
Bases scanned by Infernal:  15956
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.14 s
Infernal CPU time:            109.07 s
Scan speed:               146.3 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 21:29:57 PDT 2017

Overall scan speed: 241811.8 bp/sec