tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 121
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 5
Predicted pseudogenes 11
Total tRNAs 137
Intron Summary (tRNAs with introns: 80)
Ala AGC
5
Ala GGC
1
Ala CGC
2
Ala TGC
1
Gly GCC
7
Pro AGG
1
Pro CGG
1
Pro TGG
1
Thr AGT
3
Thr TGT
1
Val GAC
1
Val CAC
1
Val TAC
1
Ser AGA
3
Ser CGA
2
Ser TGA
1
Arg GCG
3
Arg TCG
2
Leu AAG
4
Leu CAG
3
Leu TAG
1
Leu CAA
1
Leu TAA
1
Phe GAA
4
Lys CTT
4
Glu CTC
4
Glu TTC
2
His GTG
3
Gln TTG
1
Ile AAT
4
Ile TAT
1
Met CAT
2
Tyr GTA
3
Cys GCA
3
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 1946

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
5
GGC
1
CGC
2
TGC
2
10
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
1
GCC
7
CCC
1
TCC
2
11
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
1
GGG
 
CGG
1
TGG
2
4
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
 
TGT
2
5
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
4
GAC
1
CAC
2
TAC
2
9
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
3
GGA
 
CGA
2
TGA
2
ACT
 
GCT
1
 
 
 
 
8
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
6
GCG
3
CCG
1
TCG
2
 
 
 
 
CCT
1
TCT
1
14
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
4
GAG
1
CAG
3
TAG
1
 
 
 
 
CAA
1
TAA
2
12
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
5
 
 
 
 
5
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
3
 
 
 
 
3
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
5
TTT
1
6
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
6
 
 
 
 
6
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
4
TTC
3
7
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
4
 
 
 
 
4
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
3
TTG
1
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
4
GAT
1
 
 
TAT
1
6
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
3/4
 
 
7
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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