tRNA Gene Summary

Overview
High confidence set 442
tRNAs decoding standard 20 AA 439
Selenocysteine tRNAs (TCA) 3
Notable atypical predictions  
Anticodon/isotype mismatch 20
Unexpected anticodons 13
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 15408
Secondary filter (low feature scores, possible rep. element) 587

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 29)
Gly TCC
1
Arg TCT
7
Leu CAA
6
Ile GAT
1
Ile TAT
8
Tyr GTA
6
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
5
GGC
 
CGC
4
TGC
16
25
GlyACC
 
GCC
10
CCC
2
TCC
27
39
ProAGG
9
GGG
 
CGG
2
TGG
3
14
ThrAGT
12
GGT
 
CGT
5
TGT
10
27
ValAAC
20
GAC
 
CAC
6
TAC
3
29
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
20
GGA
 
CGA
9
TGA
14
ACT
 
GCT
13
 
 
 
 
56
ArgACG
6
GCG
 
CCG
3
TCG
6
 
 
 
 
CCT
4
TCT
13
32
LeuAAG
1
GAG
 
CAG
7
TAG
4
 
 
 
 
CAA
6
TAA
13
31
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
16
 
 
 
 
16
AsnATT
 
GTT
15
 
 
 
 
15
Lys 
 
 
 
CTT
9
TTT
33
42
AspATC
 
GTC
11
 
 
 
 
11
Glu 
 
 
 
CTC
4
TTC
13
17
HisATG
 
GTG
7
 
 
 
 
7
Gln 
 
 
 
CTG
10
TTG
7
17
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
8
GAT
1
CAT
 
TAT
8
17
iMet/Met 
 
 
 
CAT
8/8
 
 
16
TyrATA
 
GTA
6
 
 
 
 
6
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
18
 
 
 
 
18
Trp 
 
 
 
CCA
4
 
 
4
SelCys 
 
 
 
 
 
TCA
3
3