tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Thu Nov  8 14:45:22 PST 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         3670
Seqs w/at least 1 hit:  283
Bases read:             145442736 (x2 for both strands)
Bases in tRNAs:         79796
tRNAs predicted:        1064
Av. tRNA length:        74
Script CPU time:        17.65 s
Scan CPU time:          1083.74 s
Scan speed:             268.4 Kbp/sec

First pass search(es) ended: Thu Nov  8 15:06:47 PST 2018

Infernal Stats:
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Candidate tRNAs read:     1064
Infernal-confirmed tRNAs:     887
Bases scanned by Infernal:  101070
% seq scanned by Infernal:  0.0 %
Script CPU time:          8.70 s
Infernal CPU time:            691.31 s
Scan speed:               146.2 bp/sec

Infernal analysis of tRNAs ended: Thu Nov  8 15:24:12 PST 2018

Overall scan speed: 161477.4 bp/sec