tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 11:39:08 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         105
Seqs w/at least 1 hit:  42
Bases read:             17403577 (x2 for both strands)
Bases in tRNAs:         14028
tRNAs predicted:        153
Av. tRNA length:        91
Script CPU time:        2.21 s
Scan CPU time:          79.34 s
Scan speed:             438.7 Kbp/sec

First pass search(es) ended: Wed Aug 23 11:40:03 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     153
Infernal-confirmed tRNAs:     152
Bases scanned by Infernal:  17088
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.50 s
Infernal CPU time:            118.08 s
Scan speed:               144.7 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 11:42:54 PDT 2017

Overall scan speed: 173058.0 bp/sec