tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 12:05:34 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         34
Seqs w/at least 1 hit:  25
Bases read:             17649378 (x2 for both strands)
Bases in tRNAs:         13266
tRNAs predicted:        142
Av. tRNA length:        93
Script CPU time:        2.18 s
Scan CPU time:          70.68 s
Scan speed:             499.4 Kbp/sec

First pass search(es) ended: Wed Aug 23 12:06:00 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     142
Infernal-confirmed tRNAs:     141
Bases scanned by Infernal:  16106
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.22 s
Infernal CPU time:            102.46 s
Scan speed:               157.2 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 12:08:22 PDT 2017

Overall scan speed: 199947.6 bp/sec