tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 12:12:27 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         25
Seqs w/at least 1 hit:  20
Bases read:             17485654 (x2 for both strands)
Bases in tRNAs:         13557
tRNAs predicted:        146
Av. tRNA length:        92
Script CPU time:        2.16 s
Scan CPU time:          72.67 s
Scan speed:             481.2 Kbp/sec

First pass search(es) ended: Wed Aug 23 12:12:48 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     146
Infernal-confirmed tRNAs:     145
Bases scanned by Infernal:  16477
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.18 s
Infernal CPU time:            101.73 s
Scan speed:               162.0 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 12:15:07 PDT 2017

Overall scan speed: 196755.4 bp/sec