tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 135
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 10
Total tRNAs 145
Intron Summary (tRNAs with introns: 133)
Ala AGC
7
Ala CGC
2
Ala TGC
1
Gly GCC
5
Gly CCC
2
Gly TCC
1
Pro AGG
6
Pro CGG
1
Pro TGG
1
Thr AGT
5
Thr CGT
1
Thr TGT
1
Val AAC
7
Val CAC
2
Ser AGA
6
Ser TGA
1
Ser GCT
1
Arg ACG
3
Arg CCG
1
Arg TCG
5
Arg CCT
3
Arg TCT
1
Leu AAG
6
Leu CAG
1
Leu CAA
3
Leu TAA
1
Phe GAA
5
Asn GTT
4
Lys CTT
7
Lys TTT
1
Asp GTC
2
Glu CTC
10
Glu TTC
3
His GTG
1
Gln TTG
2
Ile AAT
6
Ile TAT
1
iMet CAT
3
Met CAT
3
Tyr GTA
5
Cys GCA
3
Trp CCA
3
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 1360

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
7
GGC
 
CGC
2
TGC
1
10
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
9
CCC
2
TCC
4
15
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
6
GGG
 
CGG
1
TGG
1
8
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
5
GGT
 
CGT
1
TGT
1
7
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
 
CAC
2
TAC
 
9
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
6
GGA
 
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
8
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
3
GCG
 
CCG
1
TCG
5
 
 
 
 
CCT
3
TCT
1
13
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
6
GAG
 
CAG
1
TAG
 
 
 
 
 
CAA
3
TAA
1
11
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
5
 
 
 
 
5
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
7
TTT
1
8
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
10
TTC
3
13
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
3
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
3
TTG
2
5
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
6
GAT
 
 
 
TAT
1
7
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
3/3
 
 
6
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
3
 
 
3
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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