tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 12:20:06 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         779
Seqs w/at least 1 hit:  91
Bases read:             17256624 (x2 for both strands)
Bases in tRNAs:         12118
tRNAs predicted:        135
Av. tRNA length:        89
Script CPU time:        2.93 s
Scan CPU time:          170.17 s
Scan speed:             202.8 Kbp/sec

First pass search(es) ended: Wed Aug 23 12:24:37 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     135
Infernal-confirmed tRNAs:     134
Bases scanned by Infernal:  14797
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.98 s
Infernal CPU time:            132.03 s
Scan speed:               112.1 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 12:28:14 PDT 2017

Overall scan speed: 112380.7 bp/sec