tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 117
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 17
Total tRNAs 134
Intron Summary (tRNAs with introns: 104)
Ala AGC
6
Ala CGC
2
Ala TGC
1
Gly GCC
5
Gly CCC
2
Gly TCC
1
Pro AGG
3
Pro CGG
1
Pro TGG
1
Thr AGT
5
Thr CGT
1
Thr TGT
1
Val AAC
6
Val CAC
2
Ser AGA
4
Ser TGA
1
Ser GCT
1
Arg ACG
3
Arg CCG
1
Arg TCG
1
Arg CCT
3
Arg TCT
1
Leu AAG
3
Leu CAG
1
Leu CAA
3
Leu TAA
1
Phe GAA
5
Asn GTT
2
Lys CTT
3
Lys TTT
1
Asp GTC
2
Glu CTC
10
Glu TTC
3
His GTG
1
Gln TTG
2
Ile AAT
2
Ile TAT
1
iMet CAT
3
Met CAT
1
Tyr GTA
3
Cys GCA
2
Trp CCA
3
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 49856

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
6
GGC
 
CGC
2
TGC
3
11
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
9
CCC
2
TCC
5
16
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
3
GGG
 
CGG
1
TGG
2
6
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
5
GGT
 
CGT
1
TGT
2
8
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
6
GAC
 
CAC
2
TAC
 
8
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
4
GGA
 
CGA
 
TGA
2
ACT
 
GCT
1
 
 
 
 
7
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
3
GCG
 
CCG
1
TCG
3
 
 
 
 
CCT
3
TCT
1
11
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
3
GAG
 
CAG
1
TAG
 
 
 
 
 
CAA
3
TAA
1
8
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
6
 
 
 
 
6
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
3
 
 
 
 
3
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
4
TTT
1
5
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
10
TTC
3
13
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
4
 
 
 
 
4
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
3
TTG
3
6
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
2
GAT
1
 
 
TAT
1
4
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
3/3
 
 
6
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
4
 
 
 
 
4
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-