tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 12:31:05 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         53
Seqs w/at least 1 hit:  32
Bases read:             17860310 (x2 for both strands)
Bases in tRNAs:         13472
tRNAs predicted:        144
Av. tRNA length:        93
Script CPU time:        2.23 s
Scan CPU time:          73.57 s
Scan speed:             485.5 Kbp/sec

First pass search(es) ended: Wed Aug 23 12:31:39 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     144
Infernal-confirmed tRNAs:     144
Bases scanned by Infernal:  16352
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.35 s
Infernal CPU time:            107.68 s
Scan speed:               151.9 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 12:34:12 PDT 2017

Overall scan speed: 193262.0 bp/sec