tRNA Gene Summary

Overview
High confidence set 415
tRNAs decoding standard 20 AA 414
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 6
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 2466
Secondary filter (low feature scores, possible rep. element) 505

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 27)
Arg TCT
5
Leu CAA
6
Ile TAT
5
Tyr GTA
11
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
22
GGC
 
CGC
6
TGC
12
40
GlyACC
 
GCC
9
CCC
5
TCC
4
18
ProAGG
10
GGG
 
CGG
4
TGG
7
21
ThrAGT
10
GGT
 
CGT
4
TGT
7
21
ValAAC
11
GAC
 
CAC
12
TAC
7
30
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
 
CGA
4
TGA
5
ACT
 
GCT
13
 
 
 
 
35
ArgACG
10
GCG
 
CCG
4
TCG
5
 
 
 
 
CCT
7
TCT
6
32
LeuAAG
6
GAG
 
CAG
4
TAG
4
 
 
 
 
CAA
6
TAA
4
24
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
12
 
 
 
 
12
AsnATT
 
GTT
14
 
 
 
 
14
Lys 
 
 
 
CTT
14
TTT
14
28
AspATC
 
GTC
9
 
 
 
 
9
Glu 
 
 
 
CTC
14
TTC
8
22
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
11
TTG
5
16
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
13
GAT
 
CAT
 
TAT
5
18
iMet/Met 
 
 
 
CAT
11/14
 
 
25
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
21
 
 
 
 
21
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1