tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 213
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 5
Total tRNAs 220
Intron Summary (tRNAs with introns: 54)
Pro TGG
7
Val TAC
1
Ser CGA
1
Ser GCT
3
Arg ACG
4
Arg CCG
1
Phe GAA
8
Lys CTT
10
Lys TTT
7
Ile TAT
2
Met CAT
4
Tyr GTA
6
 

The codon usage of this genome was generated from protein-coding genes annotated in RefSeq.
Number of CDS: 6272
Number of Codons: 3030880

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
7
GGC
 
CGC
1
TGC
5
13
GCT
1.88
GCC
0.9
GCG
0.56
GCA
1.7
5.04%
GlyACC
 
GCC
11
CCC
1
TCC
5
17
GGT
2.23
GGC
0.68
GGG
0.69
GGA
1.52
5.12%
ProAGG
1
GGG
 
CGG
 
TGG
7
8
CCT
1.3
CCC
0.43
CCG
0.5
CCA
1.96
4.19%
ThrAGT
8
GGT
 
CGT
1
TGT
2
11
ACT
1.92
ACC
1.09
ACG
0.79
ACA
1.67
5.47%
ValAAC
10
GAC
 
CAC
1
TAC
1
12
GTT
2.33
GTC
0.93
GTG
0.97
GTA
1.15
5.38%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
6
GGA
 
CGA
1
TGA
4
ACT
 
GCT
3
 
 
 
 
14
TCT
2.1
TCC
0.99
TCG
1.29
TCA
2.13
AGT
1.53
AGC
0.79
 
 
 
 
8.83%
ArgACG
5
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
10
17
CGT
0.54
CGC
0.14
CGG
0.19
CGA
0.31
 
 
 
 
AGG
0.72
AGA
2.25
4.15%
LeuAAG
2
GAG
 
CAG
1
TAG
 
 
 
 
 
CAA
4
TAA
9
16
CTT
1.23
CTC
0.49
CTG
0.44
CTA
0.81
 
 
 
 
TTG
3.07
TTA
3.58
9.62%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
8
 
 
 
 
8
TTT
2.65
TTC
1.81
 
 
 
 
4.46%
AsnATT
 
GTT
9
 
 
 
 
9
AAT
4.39
AAC
2.19
 
 
 
 
6.58%
Lys 
 
 
 
CTT
10
TTT
8
18
 
 
 
 
AAG
3.41
AAA
3.91
7.32%
AspATC
 
GTC
10
 
 
 
 
10
GAT
4.21
GAC
1.81
 
 
 
 
6.02%
Glu 
 
 
 
CTC
1
TTC
9
10
 
 
 
 
GAG
1.73
GAA
4.71
6.44%
HisATG
 
GTG
6
 
 
 
 
6
CAT
1.47
CAC
0.64
 
 
 
 
2.11%
Gln 
 
 
 
CTG
1
TTG
7
8
 
 
 
 
CAG
1.14
CAA
2.65
3.79%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
9
GAT
1
 
 
TAT
2
12
ATT
3.44
ATC
1.53
 
 
ATA
2.1
7.07%
Met 
 
 
 
CAT
10
 
 
10
 
 
 
 
ATG
2.02
 
 
2.02%
TyrATA
 
GTA
6
 
 
 
 
6
TAT
2.2
TAC
1.36
 
 
 
 
3.56%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.13
TAA
0.22
0.35%
CysACA
 
GCA
4
 
 
 
 
4
TGT
0.8
TGC
0.4
 
 
 
 
1.2%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
1.03
 
 
1.03%
SelCys 
 
 
 
 
 
TCA
1
1
Stop 
 
 
 
 
 
TGA
0.16
0.16%