tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 288
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 2
Predicted pseudogenes 4
Total tRNAs 295
Intron Summary (tRNAs with introns: 15)
Leu CAA
4
Ile TAT
2
Tyr GTA
9

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 42417
Number of Codons: 21945319

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
12
GGC
 
CGC
3
TGC
2
17
GCT
1.44
GCC
3.36
GCG
1.4
GCA
1.28
7.48%
GlyACC
 
GCC
14
CCC
 
TCC
6
20
GGT
1.33
GGC
2.67
GGG
0.47
GGA
1.8
6.27%
ProAGG
7
GGG
 
CGG
5
TGG
5
17
CCT
0.69
CCC
1.81
CCG
1.58
CCA
1.35
5.43%
ThrAGT
8
GGT
 
CGT
3
TGT
6
17
ACT
0.95
ACC
2.13
ACG
1.44
ACA
1.1
5.62%
ValAAC
6
GAC
 
CAC
7
TAC
2
15
GTT
1.1
GTC
1.39
GTG
2.78
GTA
0.64
5.91%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
8
GGA
 
CGA
4
TGA
2
ACT
 
GCT
6
 
 
 
 
20
TCT
0.7
TCC
1.96
TCG
1.66
TCA
0.78
AGT
1.15
AGC
2.04
 
 
 
 
8.29%
ArgACG
10
GCG
 
CCG
 
TCG
10
 
 
 
 
CCT
3
TCT
3
26
CGT
0.88
CGC
1.8
CGG
0.82
CGA
0.84
 
 
 
 
AGG
0.63
AGA
0.51
5.48%
LeuAAG
4
GAG
 
CAG
8
TAG
2
 
 
 
 
CAA
4
TAA
4
22
CTT
0.9
CTC
1.38
CTG
3.82
CTA
0.82
 
 
 
 
TTG
1.61
TTA
0.45
8.98%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
8
 
 
 
 
8
TTT
1.32
TTC
2.18
 
 
 
 
3.5%
AsnATT
 
GTT
10
 
 
 
 
10
AAT
2.1
AAC
2.62
 
 
 
 
4.72%
Lys 
 
 
 
CTT
13
TTT
6
19
 
 
 
 
AAG
3.95
AAA
1.7
5.65%
AspATC
 
GTC
14
 
 
 
 
14
GAT
2.76
GAC
2.46
 
 
 
 
5.22%
Glu 
 
 
 
CTC
13
TTC
6
19
 
 
 
 
GAG
4.25
GAA
2.11
6.36%
HisATG
 
GTG
5
 
 
 
 
5
CAT
1.08
CAC
1.62
 
 
 
 
2.7%
Gln 
 
 
 
CTG
8
TTG
4
12
 
 
 
 
CAG
3.61
CAA
1.56
5.17%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
9
GAT
 
 
 
TAT
2
11
ATT
1.66
ATC
2.29
 
 
ATA
0.95
4.9%
Met 
 
 
 
CAT
12
 
 
12
 
 
 
 
ATG
2.36
 
 
2.36%
TyrATA
 
GTA
9
 
 
 
 
9
TAT
1.08
TAC
1.84
 
 
 
 
2.92%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.07
TAA
0.08
0.15%
CysACA
 
GCA
7
 
 
 
 
7
TGT
0.54
TGC
1.32
 
 
 
 
1.86%
Trp 
 
 
 
CCA
8
 
 
8
 
 
 
 
TGG
0.99
 
 
0.99%
SelCys 
 
 
 
 
 
TCA
1
1
Stop 
 
 
 
 
 
TGA
0.05
0.05%