tRNA Gene Summary

Overview
High confidence set 395
tRNAs decoding standard 20 AA 394
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 5
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 213952
Secondary filter (low feature scores, possible rep. element) 68485
Tertiary filter (excessive isotype copies, possible rep. element) 62

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 21)
Arg TCT
5
Leu CAA
4
Ile TAT
4
Tyr GTA
8
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
19
GGC
 
CGC
4
TGC
38
61
GlyACC
 
GCC
18
CCC
4
TCC
12
34
ProAGG
7
GGG
 
CGG
3
TGG
4
14
ThrAGT
8
GGT
 
CGT
5
TGT
5
18
ValAAC
7
GAC
 
CAC
7
TAC
3
17
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
9
GGA
 
CGA
3
TGA
3
ACT
 
GCT
7
 
 
 
 
22
ArgACG
8
GCG
 
CCG
4
TCG
4
 
 
 
 
CCT
6
TCT
6
28
LeuAAG
6
GAG
 
CAG
8
TAG
2
 
 
 
 
CAA
4
TAA
3
23
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
10
 
 
 
 
10
AsnATT
 
GTT
13
 
 
 
 
13
Lys 
 
 
 
CTT
8
TTT
9
17
AspATC
 
GTC
14
 
 
 
 
14
Glu 
 
 
 
CTC
11
TTC
9
20
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
11
TTG
4
15
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
10
GAT
 
CAT
 
TAT
4
14
iMet/Met 
 
 
 
CAT
9/6
 
 
15
TyrATA
 
GTA
8
 
 
 
 
8
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
35
 
 
 
 
35
Trp 
 
 
 
CCA
7
 
 
7
SelCys 
 
 
 
 
 
TCA
1
1