tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Mon Feb 11 15:30:42 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         65193
Seqs w/at least 1 hit:  11656
Bases read:             2236368823 (x2 for both strands)
Bases in tRNAs:         31300864
tRNAs predicted:        418651
Av. tRNA length:        74
Script CPU time:        509.99 s
Scan CPU time:          51261.66 s
Scan speed:             87.3 Kbp/sec

First pass search(es) ended: Mon Feb 11 22:04:38 PST 2019

Infernal Stats:
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Candidate tRNAs read:     418651
Infernal-confirmed tRNAs:     283002
Bases scanned by Infernal:  39669262
% seq scanned by Infernal:  0.9 %
Script CPU time:          2220.47 s
Infernal CPU time:            180309.69 s
Scan speed:               220.0 bp/sec

Infernal analysis of tRNAs ended: Thu Feb 14 14:57:11 PST 2019

Overall scan speed: 19089.6 bp/sec