tRNA Gene Summary

Overview
High confidence set 395
tRNAs decoding standard 20 AA 394
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 5
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 213952
Secondary filter (low feature scores, possible rep. element) 68485
Tertiary filter (excessive isotype copies, possible rep. element) 62

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 17771)
Ala AGC
613
Ala GGC
34
Ala CGC
20
Ala TGC
476
Gly ACC
47
Gly GCC
5
Gly CCC
5
Gly TCC
15
Pro AGG
43
Pro GGG
34
Pro CGG
5
Pro TGG
342
Thr AGT
65
Thr GGT
12
Thr CGT
5
Thr TGT
209
Val AAC
56
Val GAC
19
Val CAC
23
Val TAC
35
Ser AGA
158
Ser GGA
297
Ser CGA
126
Ser TGA
12675
Ser ACT
12
Ser GCT
7
Arg ACG
3
Arg GCG
1
Arg CCG
1
Arg TCG
3
Arg CCT
6
Arg TCT
18
Leu AAG
43
Leu GAG
239
Leu CAG
43
Leu TAG
58
Leu CAA
115
Leu TAA
837
Phe AAA
88
Phe GAA
176
Asn ATT
9
Asn GTT
3
Lys CTT
7
Lys TTT
18
Asp ATC
7
Asp GTC
4
Glu CTC
4
Glu TTC
13
His ATG
16
His GTG
20
Gln CTG
3
Gln TTG
117
Ile AAT
15
Ile GAT
10
Ile TAT
29
Met CAT
10
Tyr ATA
12
Tyr GTA
15
Supres TCA
255
Supres CTA
14
Supres TTA
175
Cys ACA
14
Cys GCA
14
Trp CCA
18
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
26773
GGC
2614
CGC
6364
TGC
189008
224759
GlyACC
1035
GCC
122
CCC
932
TCC
946
3035
ProAGG
371
GGG
75
CGG
44
TGG
790
1280
ThrAGT
2059
GGT
280
CGT
406
TGT
7519
10264
ValAAC
2011
GAC
188
CAC
5587
TAC
4102
11888
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
965
GGA
394
CGA
469
TGA
15842
ACT
128
GCT
89
 
 
 
 
17887
ArgACG
17
GCG
2
CCG
10
TCG
15
 
 
 
 
CCT
95
TCT
78
217
LeuAAG
148
GAG
278
CAG
104
TAG
125
 
 
 
 
CAA
2703
TAA
1009
4367
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
152
GAA
210
 
 
 
 
362
AsnATT
81
GTT
33
 
 
 
 
114
Lys 
 
 
 
CTT
73
TTT
126
199
AspATC
423
GTC
96
 
 
 
 
519
Glu 
 
 
 
CTC
775
TTC
1306
2081
HisATG
32
GTG
33
 
 
 
 
65
Gln 
 
 
 
CTG
30
TTG
267
297
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
300
GAT
51
CAT
 
TAT
432
783
iMet/Met 
 
 
 
CAT
11/550
 
 
561
TyrATA
32
GTA
32
 
 
 
 
64
Supres 
 
TCA
325
CTA
37
TTA
230
592
CysACA
81
GCA
106
 
 
 
 
187
Trp 
 
 
 
CCA
79
 
 
79
SelCys 
 
 
 
 
 
TCA
1
1