Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>.>..>>>>.........<<<<.>.>>>...............................................<<<.<................>>>>>.......<<<<<<.<<<<<. GGGGCTATAGCTCAGTTGGTA.GAGCGCTTCCTTAGCAttctttgagtgatcaaa.....................T..GGACGAG...........GtCTGGCGTTCGAATCGCCATTGCTCCA tRNA-Ala-AGC-1-1 Sc: 55.0 GGGGCTGTAGCTCAGTTGGTA.GAGCGCTTCCTTAGCGtgctatacgttaaatc......................T..GGATGAG...........GtCTGGTGTTCAATTCGCCACTGCTCCA tRNA-Ala-AGC-2-2 Sc: 45.4 GGGGCTGTAGCTCAGTTGGTA.GAGCGCTTCCTTAGCGtcccatatgcggcacaat....................T..GGATGAG...........GtCTGGTGTTCAATTCGCCACTGCTCCA tRNA-Ala-AGC-2-1 Sc: 45.3 >>>>..>..>.>>.........<<.<.>>>>>...............................................<<<<<................>>>>>.......<<<<<<..<<<<. GACCTTGTGGCATAAC.GGTA.ATACACACTCTCGGCG......................................TggGAGTGGG...........A.TCTTGGTTCGAGTCCAAGCTTGGTCA tRNA-Ala-GGC-1-1 Sc: 28.8 >>>>>>>..>>>>.........<<<<.>>>>>...............................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGATTGTAGTTCAGG.GGTA.GAACGTTTCTTTCGCActcccagaagcccaaaaagcttcgagtcgaaacgatccT..AGAAAAG...........GtCCCCGGTTCAAATCCGGGCAATTCCA tRNA-Ala-CGC-1-1 Sc: 62.1
Arg tRNAs
>>>>>>>..>>>...........<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<. GGCCTACTGGCCCAATGGC.A.AGGCGTCTGACTACGAttagtaa...........ATCAGGAG...........AtTGCAGGTTCGATCCCTGCGTAGGTCA tRNA-Arg-ACG-1-1 Sc: 64.5 >>>>>>>..>>>>.........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<. GGCCGCGTGGCGCAATGGT.A.GCGCGTTGCTCTCCTActagggaatatagta...AAGCAAAG...........GgTTTGGGTTCGAGTCCCAACGTGGTCG tRNA-Arg-CCT-1-1 Sc: 67.4 >>>>>>>..>>>>.........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCACCTGGCGCAATGGTtA.GCGCATCTGACTTCTAtggtcctccaagacagctATCAGAAG...........GcTCTGAGTTCGAGTCTCAGGGTGGGTG tRNA-Arg-TCT-1-1 Sc: 71.3
Asn tRNAs
>>>>>>>..>>.>.........<.<<.>>>>>..............................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGCTATGGCACAATGGTtA.GCGCATTCGGCTGTTAcatctggtgatcccaggtaagcaACCGAAAG...........GtTGTAAGTTCGACCCTTACTAGCACCG tRNA-Asn-GTT-1-1 Sc: 64.0 GGTGGTATGGCACAATGGTtA.GCGCATTCGGCTGTTAtatctgccatcggcaggtaagcgACCGAAAG...........GtTGTAAGTTCGACCCTTACTATCACCG tRNA-Asn-GTT-2-1 Sc: 62.5 >>>.>>>..>>>>.........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<<<<.<<<. GTCGCCATAGCTCAACGGT.A.GAGCAGAATACTGTTA.......................ATATTTTG...........A.TAGATGTTCGAGTCATCTTGGGGACT tRNA-Asn-GTT-3-1 Sc: 50.0
Asp tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCTCAGATGGTCCAGTGGTcA.AGATTTCCGCCTGTCACGCGGAAG...........ACCGGGGTTCGATTCCCCGTCTGAGAG tRNA-Asp-GTC-1-1 Sc: 73.0 TCTCGAATGGTCCAGTGGTcA.AGATTCCCGCCTGTCACGCGGGCG...........ACCGGGGTTCGATTCCCCGTTCGAGAG tRNA-Asp-GTC-2-1 Sc: 69.2 TCTCGAATGGTCCAGTGGTcA.AGATTCCCGCCTGTCACGCGGGCG...........ACCGGGGTTCGATTCCCCGTTCGAGAG tRNA-Asp-GTC-2-2 Sc: 69.2
Cys tRNAs
Gln tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>...............................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTGTATGGTGTAGT.GGTtA.GCACTCCAGATTCTGAtcttcagagat.............TTCTGGCG...........ACTTGGGTTCAATTCCCAATACGACCT tRNA-Gln-CTG-1-1 Sc: 60.6 >>>>>>>..>>>............<<<.>>>>>...............................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTGAATAGTGTAGTTGGTtA.TCACATCGGATTTTGActagcggcttcggcccgtcgaaacTTCCGGGA...........ACTTGGGTTCGAATCCCAGTTCGACCT tRNA-Gln-TTG-1-1 Sc: 55.5
Glu tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>..............................................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCGAATTGGTCCAGCGGTcA.GGATCTCCCGCTCTCAtacagagcacggatcagcaagcgattgcctgatcaggcgCCGGGAAG...........GCCCGGGTTCGACTCCCGGATTCGGAA tRNA-Glu-CTC-1-1 Sc: 60.4 TCCAAATTGGTTTAATGGTtA.GAATACCCGGCTCTCAtgagaaaatctcaagtgga....................CCCGGGAG...........ATCCGGGTTCAATCCCCGGGTTTGGAT tRNA-Glu-CTC-2-1 Sc: 53.9 >>>>>>>..>>>>.........<<<<.>>>>>..............................................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCGATATGGTGTAGTGGTtA.ACATCGTCCGCTTTCAgtcggtcaacagaccaacagta.................CCGGACAG...........CCCCGGGTTCGATTCCCGGTATCGGAA tRNA-Glu-TTC-1-1 Sc: 56.7
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>......................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGTTTGTGGTTTAGTGGT.A.AAATTCATCGTTGCCAtctgcctccgcaggtcaagt...........TCGATGAG...........CCCCGGGTTCAATTCCCGGCAGACGCA tRNA-Gly-GCC-1-1 Sc: 59.2 GCGTTTGTGGTTCAGTGGT.A.GAATTCATCGTTGCCAtgagcagcagcccttctgggactaagccataTCGATGAG...........GCCCGGATTCGATTTCCGGCGGACGCA tRNA-Gly-GCC-2-1 Sc: 52.7 >>>>>>>..>>>...........<<<.>>>>>......................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GCTGCTATGGTCTAACGGT.A.TGATGCTCGTTTCCCAtcggagaaaatccggtaccaatc........TGCGGGCG...........ACGCGGGTTCGACTCCCGCTGGCAGCA tRNA-Gly-CCC-1-1 Sc: 52.5 >>>>>>>..>>>>.........<<<<.>>>>>......................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GCATCATTGGTCTAACGGTtA.GGATTGCCGCCTTCCAatgcggacttcggttcgcagttgaa......AGCGGCAG...........GTTCGGGTTCGATTCCCGAATGATGCA tRNA-Gly-TCC-1-1 Sc: 55.2
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GCCGGCATAGTATAGTGGTcA.TTACATATCGTTGTGGataccgaaaggtatataaagcatatCCGATATA...........ACCTCAGTTCGATTCTGAGTGCCGGCA tRNA-His-GTG-1-1 Sc: 55.4
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>..........................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGCTTAGCTCAGCTGGTtA.GAGCGTGGTGCTAATA...................................ACGCCAAG...........GtCGCGAGTTCGATCCTCGTAGTGACCA tRNA-Ile-AAT-1-1 Sc: 78.5 AGTTCCATAGCTCAGCTGGTtA.GAGCGCAGTGCTAATAtttgata............................ACGCTGAT...........GtCGCGAGTTCGATCCTCGTTGGGACTA tRNA-Ile-AAT-2-1 Sc: 62.7 >>.>>>>..>>>>..........<<<<.>>>>............................................<<<<................>>>>>.......<<<<<<<<<.<<. AGCCCAATAACTCAGT.GGT.A.GAGTGTCGTTCTTATAtggagaatctgagaaatcagcttcatatgccagaaATGCGAAG...........GtCGCGGGTTCGAGCCCCGTTTGGACTA tRNA-Ile-TAT-1-1 Sc: 58.4
Leu tRNAs
>>>>>>>..>>>>...........<<<<.>>>>>....................................<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<. GGTGAGATGGCCGAGTTGGTctA.TGGCGCCAGGTTAAGGtcataccttagcaagcgaca.........TCCTGGTACGGGTAA......CCGTGCGTGGGTTCGAATCCCAC.TCTCATCA tRNA-Leu-AAG-1-1 Sc: 67.9 >>>>>>>..>>>.............<<<.>>>>>....................................<<<<<.>>..............<<..>>>>>.......<<<<<.<<<<<<<. GGCAACGTGGCCGAGT.GGTctA.AGGCGCTGTGTTCAGGtaaaccgttctgattggacgatttcagtaTCGCAGTGGGA..........AACCGCAAGGGTTCGAATCCCTT.CGTTGTCA tRNA-Leu-CAG-1-1 Sc: 59.3 >>>>>>>..>>>>...........<<<<.>>.>>....................................<<.<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<. GGCAAGATGGCCGAGT.GGTt.A.TGGCGTGTGACTCAAGcgcaagcttcgctggctcagtcagtgtg.TTCTCATGGGCTTT.......GCCCGCGGGGGTTCGAATCCCCC.TCTTGTCA tRNA-Leu-CAA-1-1 Sc: 71.3 >>>>>>>..>>>>...........<<<<.>>>>>....................................<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<. GGCATCTTGTCCGAGT.GGTt.A.TGGAGTTGGTTTTAAGtctgtttgtccaacaaacttaaacta...CACCAATGCTCGAAA......GAGCGCGCGCGTTCGAACCGCGC.AGATGTCA tRNA-Leu-TAA-1-1 Sc: 52.2
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.............................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGGTTAGCTCAATCGGTAGAGCGTAAGACTCTTA......................ATCTTAAG...........GcTGCGGGTTCGACCCCCGCATCGGGCT tRNA-Lys-CTT-1-1 Sc: 84.7 >>>>>>>..>>>>........<<<<.>>>>>.............................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCCCTTAGCTTAATCGGAAGAGCGTCAGACTTTTAcgaagacaacttcgtcacggtcATCTGAAG...........GtCGCCAGTTCGAGCCTGGCAGGGGGCG tRNA-Lys-TTT-1-1 Sc: 72.7
Met tRNAs
>>>>>>>..>>>............<<<.>>>>.........................................<<<<................>>>>>.......<<<<<<<<<<<<. GCCTTCATGGTGTAGTTGGTtA.TCACGTGAGTCTCATAttccaatatgacgatcttcccaaagatcggtaATCTCGAG...........GtCACCAGTTCGATCCTGGTTGAGGGCA tRNA-Met-CAT-1-1 Sc: 68.5 >>>>>>>..>>>>..........<<<<.>>>>>.......................................<<<<<................>>>>>.......<<<<<<<<<<<<. AGCATCGTGGCGCAGT.GGA.A.GCGCGCCGGGCTCATA................................ACCCGGAG...........GcCAACAGATCGAAACTGTTCGATGCTA tRNA-iMet-CAT-1-1 Sc: 65.4
Phe tRNAs
>>>>.>>..>>>>........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<.<<<<. GCGGGTTTAGCTCAGTTGGGAGAGCGTCAGACTGAAGtcaaacaacagtcataaaATCTGAAG...........GtCGTGTGTTCGATCCACACAAACCGCA tRNA-Phe-GAA-1-1 Sc: 67.9
Pro tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCGGTTATGGTTTAGTGGTA.TAATTCTCGCTTAGGGcttcggcattcgtgtcgtggata.........................TGCGAGAG...........GtCCCAGGTTCGAGCCCTGGTAACCGCC tRNA-Pro-AGG-1-1 Sc: 64.5 GCGGTTATGGTTTAGTGGTA.TAATTCTCGCTTAGGGccttcgattcatcgatcaatc...........................TGCGAGAG...........GtCCCAGGTTCGAGCCCTGGTAACCGCC tRNA-Pro-AGG-1-2 Sc: 64.5 >>>>>>>..>>>..........<<<.>>>>>.......................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCGACGTGGTTTAGGGGTA.TAATTCTCGCTTCGGGtttgcccactcacgacacaacgtgagtcgacatagcgagttcctgaaaTGTGAGAG...........GtCCTGGGTTCGACTCCCAGCGTCGGCC tRNA-Pro-CGG-1-1 Sc: 57.3 >>>>..>..>>>>........<<<<.>.>>.........................................................<<.<................>>>>>.......<<<<<<..<<<<. GACCCTGTGGTGTAATGGTA.ACACGCATCTTCATCGggagggcttgttgtaacattccttcactgt..................CCGAAGGA...........GtTCTTGGTTCGAATCCAAGCCTGGTCA tRNA-Pro-CGG-2-1 Sc: 21.7 >>>>>>>..>>>..........<<<.>>>>>.......................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTTCATGGTCTAGTGGTA.TGATTCTCGCTTTGGGttgcattcagcagtca................................TGCGAGAG...........GcCCCGCGTTCGAATCGCGGTGGAGCCC tRNA-Pro-TGG-1-1 Sc: 59.5
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>...........<<<.>>>>>............................................................................<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<. GTCGCTGTGGCCGAGTGGTtA.AGGCGATTGACTAGAAtttcccaaattccagtt....................................................ATCAATTCTCT.TC.......GGGGGCATAGGTTCGAGTCCTAT.CGGCGACG tRNA-Ser-AGA-2-1 Sc: 71.1 GTCGCTTTGGCCGAGTGGTtA.AGGCGATTGACTAGAAagacattgttctctcttgca.................................................ATCAATTCCCTC........CGGGGGCATAGGTTCGAGTCCTAT.AGGCGACG tRNA-Ser-AGA-1-1 Sc: 69.5 >>>>>>>..>>>...........<<<.>>>>>............................................................................<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<. GTCAGTGTGGCCGAGTGGTtA.AGGCGTTTGACTCGAAttccctccgagttggat....................................................ATCAAATGGGT.TC.......GCCCGCACAGGTTCGAATCCTGT.CGCTGACG tRNA-Ser-CGA-1-1 Sc: 75.3 >>>>>>>..>>>...........<<<.>>>>>............................................................................<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<. GCTGCTATGTCCGAGTGGTtA.AGGAGTGAGACTTGAActgtctacggacgctcaatggt...............................................ATCTCATGGGT.TC.......GCCCGCAGAGGTTCGATCCCTCT.TGGCAGCG tRNA-Ser-TGA-1-1 Sc: 67.2 >>>>>>>..>>>...........<<<.>.>>..............................................................................<<.<.....................>>>>>.......<<<<<.<<<<<<<. GGCACTTTGGCGGAGTGGTtA.ACGCGCCAGCCTGCTAagctggtaccttcggggtaagtgacaagaatacgcacaatgtttaacaatacataaattaacatctctcAATTAGT..................GCGTGAGTTCGAATCTCAC.AGGTGTCG tRNA-Ser-GCT-1-1 Sc: 48.4
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<<<<<<<. GCTCCTATAGCTCAGTTGGTA.GAGCGCGACACTAGTAcctgctgagtaatctgca...ATGTCGAG...........GtCTTCGGTTCAAATCCGAATGGGAGCA tRNA-Thr-AGT-1-1 Sc: 73.9 >>>>>.>..>>>>.........<<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<.<<<<<. GCTCGTATAGCTCAGC.GGTA.GAGCGTCTCACTCGTAtcgtcccgacgattgggtgaaATGAGAAG...........GtCCTAGGTTCAAGTCCTAGTTCGAGCA tRNA-Thr-CGT-1-1 Sc: 76.0
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>..............................<<<<<................>>>>>.......<<<<<<<<<<<<. GACTGGTTGGCGCAACGGTA.GCGCGTTCGACTCCAGatggtggcatcaccgttaggc..ATCGAAAG...........GcTAGGCGTTCAAATCGCCTACTGGTCA tRNA-Trp-CCA-1-1 Sc: 62.5 GACTGATTGGCGCAACGGTA.GCGCGTTCGACTCCAGgtgcttggaagacaagtcgtgaaATCGAAAG...........GcTGGGCGTTCGAATCGCTCATCGGTCA tRNA-Trp-CCA-2-1 Sc: 61.8
Tyr tRNAs
Val tRNAs
>>>>>>>..>>>............<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTTTCATGGTGTAGTTGGTtA.TCACGCGTCCTTAACA.............CGGACGAG...........GtCTTGAGTTCGATCCTCAATGAAATCA tRNA-Val-AAC-1-1 Sc: 69.0 GGTTTCATGGTGTAGTTGGTtA.TCACGCGTCCTTAACA.............CGGACGAG...........GtCTTGAGTTCGATCCTCAATGAAATCA tRNA-Val-AAC-1-2 Sc: 69.0 >>>>>>>..>>>............<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GGCCGAATAGTGTAGTTGGTtA.TCACGTTCGCTTCACA.............CGCGAGAG...........GtCGAGGGATCGAGCCCCTCTTCGGTCA tRNA-Val-CAC-1-1 Sc: 73.0 >>>>>>>..>>>............<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGTGTGTAGTCTAGT.GGTtA.TGATTTTTCCTTTACActtcacgtgaaaaCGGAAACG...........GtCCTCAGTTCGACCCTGAGCACGCTCA tRNA-Val-TAC-1-1 Sc: 53.0