tRNA Gene Summary

Overview
High scoring set 8676
tRNAs decoding standard 20 AA 8673
Selenocysteine tRNAs (TCA) 3
Notable atypical predictions  
Anticodon/isotype mismatch 149
Unexpected anticodons 49
Non-canonical anticodon loop length 5
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 4277
Secondary filter (low feature scores, possible rep. element) 4982
Tertiary filter (excessive isotype copies, possible rep. element) 2439

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 712)
Gly CCC
2
Pro AGG
1
Arg TCT
132
Leu CAA
253
Leu TAA
2
Ile TAT
92
Tyr GTA
230
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
5
GGC
 
CGC
47
TGC
173
225
GlyACC
 
GCC
406
CCC
98
TCC
25
529
ProAGG
296
GGG
 
CGG
92
TGG
159
547
ThrAGT
169
GGT
 
CGT
25
TGT
25
219
ValAAC
238
GAC
 
CAC
232
TAC
113
583
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
341
GGA
 
CGA
48
TGA
177
ACT
 
GCT
416
 
 
 
 
982
ArgACG
138
GCG
 
CCG
29
TCG
44
 
 
 
 
CCT
78
TCT
132
421
LeuAAG
241
GAG
 
CAG
300
TAG
193
 
 
 
 
CAA
255
TAA
33
1022
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
152
 
 
 
 
152
AsnATT
 
GTT
747
 
 
 
 
747
Lys 
 
 
 
CTT
549
TTT
431
980
AspATC
 
GTC
150
 
 
 
 
150
Glu 
 
 
 
CTC
230
TTC
192
422
HisATG
 
GTG
238
 
 
 
 
238
Gln 
 
 
 
CTG
209
TTG
103
312
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
196
GAT
 
CAT
 
TAT
92
288
iMet/Met 
 
 
 
CAT
239/257
 
 
496
TyrATA
 
GTA
230
 
 
 
 
230
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
88
 
 
 
 
88
Trp 
 
 
 
CCA
42
 
 
42
SelCys 
 
 
 
 
 
TCA
3
3