tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 12244
Selenocysteine tRNAs (TCA) 14
Possible suppressor tRNAs (CTA,TTA) 15
tRNAs with undetermined or unknown isotypes 19
Predicted pseudogenes 0
Total tRNAs 12292
Intron Summary (tRNAs with introns: 813)
Gly CCC
3
Gly TCC
2
Pro AGG
7
Val AAC
2
Arg TCT
247
Leu AAG
4
Leu TAG
8
Leu CAA
234
Leu TAA
8
Phe AAA
1
Lys TTT
3
Asp GTC
1
Ile AAT
1
Ile TAT
61
Met CAT
2
Tyr ATA
4
Tyr GTA
225
 

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 19062
Number of Codons: 8042248

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
92
GGC
4
CGC
112
TGC
368
576
GCT
2.09
GCC
1.95
GCG
0.86
GCA
1.66
6.56%
GlyACC
11
GCC
836
CCC
268
TCC
47
1162
GGT
1.37
GGC
1.72
GGG
1
GGA
2.15
6.24%
ProAGG
315
GGG
2
CGG
180
TGG
205
702
CCT
1.66
CCC
1.27
CCG
0.82
CCA
1.57
5.32%
ThrAGT
359
GGT
10
CGT
66
TGT
290
725
ACT
1.45
ACC
1.62
ACG
0.74
ACA
1.7
5.51%
ValAAC
232
GAC
6
CAC
227
TAC
230
695
GTT
1.41
GTC
1.48
GTG
2.83
GTA
0.67
6.39%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
336
GGA
2
CGA
80
TGA
209
ACT
14
GCT
424
 
 
 
 
1065
TCT
1.69
TCC
1.52
TCG
0.56
TCA
1.32
AGT
1.32
AGC
1.84
 
 
 
 
8.25%
ArgACG
203
GCG
24
CCG
59
TCG
107
 
 
 
 
CCT
104
TCT
252
749
CGT
0.69
CGC
0.96
CGG
0.66
CGA
0.67
 
 
 
 
AGG
1.02
AGA
1.43
5.43%
LeuAAG
270
GAG
4
CAG
300
TAG
244
 
 
 
 
CAA
241
TAA
73
1132
CTT
1.27
CTC
1.7
CTG
3.76
CTA
0.62
 
 
 
 
TTG
1.23
TTA
0.7
9.28%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
10
GAA
197
 
 
 
 
207
TTT
1.82
TTC
2.08
 
 
 
 
3.9%
AsnATT
24
GTT
1045
 
 
 
 
1069
AAT
1.63
AAC
2.41
 
 
 
 
4.04%
Lys 
 
 
 
CTT
953
TTT
525
1478
 
 
 
 
AAG
3.07
AAA
2.93
6%
AspATC
1
GTC
150
 
 
 
 
151
GAT
2.48
GAC
2.78
 
 
 
 
5.26%
Glu 
 
 
 
CTC
245
TTC
225
470
 
 
 
 
GAG
4.28
GAA
2.44
6.72%
HisATG
10
GTG
387
 
 
 
 
397
CAT
1.09
CAC
1.48
 
 
 
 
2.57%
Gln 
 
 
 
CTG
266
TTG
105
371
 
 
 
 
CAG
3.35
CAA
1.18
4.53%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
258
GAT
10
 
 
TAT
75
343
ATT
1.65
ATC
2.37
 
 
ATA
0.77
4.79%
Met 
 
 
 
CAT
522
 
 
522
 
 
 
 
ATG
2.55
 
 
2.55%
TyrATA
5
GTA
236
 
 
 
 
241
TAT
1.26
TAC
1.7
 
 
 
 
2.96%
Supres 
 
 
 
CTA
9
TTA
6
15
Stop 
 
 
 
TAG
0.06
TAA
0.11
0.17%
CysACA
9
GCA
136
 
 
 
 
145
TGT
1.13
TGC
1.12
 
 
 
 
2.25%
Trp 
 
 
 
CCA
44
 
 
44
 
 
 
 
TGG
1.16
 
 
1.16%
SelCys 
 
 
 
 
 
TCA
14
14
Stop 
 
 
 
 
 
TGA
0.14
0.14%