tRNA Gene Summary

Overview
High confidence set 442
tRNAs decoding standard 20 AA 441
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 3
Unexpected anticodons 1
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 5559
Secondary filter (low feature scores, possible rep. element) 1149
Tertiary filter (excessive isotype copies, possible rep. element) 25

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 26)
Ser AGA
1
Arg TCT
4
Leu CAA
5
Ile TAT
4
Tyr GTA
12
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
14
GGC
 
CGC
4
TGC
8
26
GlyACC
 
GCC
14
CCC
5
TCC
8
27
ProAGG
10
GGG
 
CGG
3
TGG
4
17
ThrAGT
8
GGT
 
CGT
4
TGT
5
17
ValAAC
7
GAC
 
CAC
3
TAC
6
16
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
8
GGA
 
CGA
3
TGA
3
ACT
 
GCT
7
 
 
 
 
21
ArgACG
6
GCG
 
CCG
3
TCG
4
 
 
 
 
CCT
7
TCT
5
25
LeuAAG
6
GAG
 
CAG
6
TAG
3
 
 
 
 
CAA
5
TAA
1
21
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
6
 
 
 
 
6
Lys 
 
 
 
CTT
123
TTT
10
133
AspATC
 
GTC
13
 
 
 
 
13
Glu 
 
 
 
CTC
9
TTC
8
17
HisATG
 
GTG
5
 
 
 
 
5
Gln 
 
 
 
CTG
8
TTG
4
12
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
8
GAT
 
CAT
 
TAT
4
12
iMet/Met 
 
 
 
CAT
8/7
 
 
15
TyrATA
 
GTA
12
 
 
 
 
12
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
31
 
 
 
 
31
Trp 
 
 
 
CCA
7
 
 
7
SelCys 
 
 
 
 
 
TCA
1
1