tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 21:48:12 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         40
Seqs w/at least 1 hit:  28
Bases read:             37173200 (x2 for both strands)
Bases in tRNAs:         7987
tRNAs predicted:        69
Av. tRNA length:        115
Script CPU time:        3.82 s
Scan CPU time:          166.62 s
Scan speed:             446.2 Kbp/sec

First pass search(es) ended: Mon Aug 21 21:48:48 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     69
Infernal-confirmed tRNAs:     63
Bases scanned by Infernal:  9367
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.11 s
Infernal CPU time:            71.43 s
Scan speed:               131.1 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 21:50:10 PDT 2017

Overall scan speed: 305977.4 bp/sec