tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 21:50:20 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         908
Seqs w/at least 1 hit:  50
Bases read:             37130611 (x2 for both strands)
Bases in tRNAs:         8405
tRNAs predicted:        77
Av. tRNA length:        109
Script CPU time:        6.59 s
Scan CPU time:          263.58 s
Scan speed:             281.7 Kbp/sec

First pass search(es) ended: Mon Aug 21 21:55:41 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     77
Infernal-confirmed tRNAs:     73
Bases scanned by Infernal:  9945
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.60 s
Infernal CPU time:            86.40 s
Scan speed:               115.1 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 21:57:33 PDT 2017

Overall scan speed: 207335.1 bp/sec