tRNA Gene Summary

Overview
High confidence set 287
tRNAs decoding standard 20 AA 286
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 2
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 2726
Secondary filter (low feature scores, possible rep. element) 692

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 30)
Gly TCC
1
Arg CCT
4
Arg TCT
8
Leu CAA
3
Ile TAT
4
Tyr GTA
10
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
13
GGC
 
CGC
4
TGC
5
22
GlyACC
 
GCC
8
CCC
3
TCC
6
17
ProAGG
6
GGG
 
CGG
2
TGG
5
13
ThrAGT
10
GGT
 
CGT
4
TGT
2
16
ValAAC
7
GAC
 
CAC
5
TAC
3
15
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
7
GGA
 
CGA
1
TGA
3
ACT
 
GCT
7
 
 
 
 
18
ArgACG
7
GCG
 
CCG
2
TCG
5
 
 
 
 
CCT
8
TCT
9
31
LeuAAG
3
GAG
 
CAG
5
TAG
4
 
 
 
 
CAA
3
TAA
4
19
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
7
 
 
 
 
7
Lys 
 
 
 
CTT
14
TTT
11
25
AspATC
 
GTC
8
 
 
 
 
8
Glu 
 
 
 
CTC
4
TTC
6
10
HisATG
 
GTG
3
 
 
 
 
3
Gln 
 
 
 
CTG
4
TTG
6
10
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
9
GAT
 
CAT
 
TAT
4
13
iMet/Met 
 
 
 
CAT
9/5
 
 
14
TyrATA
 
GTA
10
 
 
 
 
10
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
21
 
 
 
 
21
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
1
1