tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Tue Dec 26 14:54:25 PST 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         8402
Seqs w/at least 1 hit:  310
Bases read:             2947024286 (x2 for both strands)
Bases in tRNAs:         1195704
tRNAs predicted:        15911
Av. tRNA length:        75
Script CPU time:        317.79 s
Scan CPU time:          22503.32 s
Scan speed:             261.9 Kbp/sec

First pass search(es) ended: Tue Dec 26 15:53:11 PST 2017

Infernal Stats:
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Candidate tRNAs read:     15911
Infernal-confirmed tRNAs:     3717
Bases scanned by Infernal:  1513924
% seq scanned by Infernal:  0.0 %
Script CPU time:          65.24 s
Infernal CPU time:            3292.28 s
Scan speed:               459.8 bp/sec

Infernal analysis of tRNAs ended: Tue Dec 26 16:55:38 PST 2017

Overall scan speed: 225147.3 bp/sec