tRNA Gene Summary

Overview
High confidence set 287
tRNAs decoding standard 20 AA 286
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 2
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 2726
Secondary filter (low feature scores, possible rep. element) 692

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 79)
Ala AGC
1
Ala GGC
1
Gly GCC
1
Gly CCC
1
Gly TCC
7
Pro TGG
1
Thr AGT
1
Thr GGT
1
Val GAC
1
Ser ACT
2
Ser GCT
14
Arg GCG
1
Arg CCT
5
Arg TCT
9
Leu TAG
1
Leu CAA
4
Asn ATT
1
Asn GTT
1
Glu TTC
1
His ATG
1
His GTG
4
Gln TTG
1
Ile TAT
4
Tyr GTA
11
Supres TCA
1
Cys ACA
1
Cys GCA
2
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
17
GGC
6
CGC
4
TGC
22
49
GlyACC
23
GCC
148
CCC
59
TCC
312
542
ProAGG
11
GGG
16
CGG
3
TGG
10
40
ThrAGT
24
GGT
29
CGT
6
TGT
6
65
ValAAC
8
GAC
4
CAC
8
TAC
11
31
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
2
CGA
6
TGA
6
ACT
182
GCT
1313
 
 
 
 
1519
ArgACG
19
GCG
92
CCG
4
TCG
13
 
 
 
 
CCT
47
TCT
114
289
LeuAAG
8
GAG
17
CAG
6
TAG
8
 
 
 
 
CAA
19
TAA
6
64
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
2
GAA
24
 
 
 
 
26
AsnATT
25
GTT
177
 
 
 
 
202
Lys 
 
 
 
CTT
44
TTT
41
85
AspATC
4
GTC
36
 
 
 
 
40
Glu 
 
 
 
CTC
20
TTC
72
92
HisATG
27
GTG
172
 
 
 
 
199
Gln 
 
 
 
CTG
12
TTG
22
34
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
18
GAT
51
CAT
 
TAT
9
78
iMet/Met 
 
 
 
CAT
9/13
 
 
22
TyrATA
 
GTA
27
 
 
 
 
27
Supres 
 
TCA
29
CTA
9
TTA
3
41
CysACA
23
GCA
173
 
 
 
 
196
Trp 
 
 
 
CCA
13
 
 
13
SelCys 
 
 
 
 
 
TCA
1
3