tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 158
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 2
tRNAs with undetermined or unknown isotypes 14
Predicted pseudogenes 16
Total tRNAs 190
Intron Summary (tRNAs with introns: 141)
Ala AGC
5
Ala CGC
2
Ala TGC
4
Gly GCC
2
Gly CCC
5
Gly TCC
1
Pro AGG
4
Pro CGG
2
Pro TGG
4
Thr AGT
6
Thr CGT
2
Val AAC
6
Val CAC
2
Val TAC
2
Ser AGA
6
Ser CGA
1
Ser TGA
1
Ser GCT
3
Arg ACG
2
Arg CCG
1
Arg TCG
4
Arg CCT
3
Arg TCT
1
Leu AAG
4
Leu GAG
1
Leu CAG
2
Leu TAG
1
Leu CAA
4
Leu TAA
1
Phe AAA
8
Phe GAA
6
Asn GTT
3
Asp GTC
5
Glu CTC
3
Glu TTC
3
His ATG
1
His GTG
1
Gln CTG
4
Gln TTG
2
Ile AAT
10
Ile TAT
1
iMet CAT
2
Met CAT
2
Tyr GTA
2
Supres TCA
2
Cys GCA
2
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 138531

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
5
GGC
 
CGC
2
TGC
5
12
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
8
CCC
6
TCC
3
17
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
4
GGG
 
CGG
2
TGG
4
10
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
6
GGT
 
CGT
2
TGT
1
9
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
6
GAC
 
CAC
2
TAC
3
11
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
6
GGA
 
CGA
2
TGA
1
ACT
 
GCT
3
 
 
 
 
12
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
2
GCG
 
CCG
1
TCG
4
 
 
 
 
CCT
3
TCT
4
14
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
4
GAG
1
CAG
2
TAG
1
 
 
 
 
CAA
4
TAA
1
13
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
8
GAA
7
 
 
 
 
15
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
5
 
 
 
 
5
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
6
 
 
 
 
6
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
4
TTC
4
8
 
 
 
 
GAG
0
GAA
0
0%
HisATG
1
GTG
5
 
 
 
 
6
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
4
TTG
2
6
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
10
GAT
1
 
 
TAT
1
12
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
5/4
 
 
9
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
2
CTA
 
TTA
 
2
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-