Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>..........<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGCCTTTGGTCTAGTGGTA.TGACGCATCCTTAGCA.....................TGGATGAG...........GtCCGGGGTTCAATTCCCCGAAGGTCCA tRNA-Ala-AGC-1-1 Sc: 73.4 >>>>>.>..>>>..........<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<.<<<<<. GGGCCTGTGGTCTAGGGGTA.TGGCGTTCGCTTCGCAttatttattaacctgcgagttTGTGAAAG...........GtCCGGGGTTCAAATCCCCGCTGGTCCA tRNA-Ala-CGC-1-1 Sc: 57.4 >>>>>.>..>>>>........<<<<.>>>>>............................<<<<<................>>>>>.......<<<<<<.<<<<<. GGGGTTGTAGCTCAGGGGTA.GAGCGCTCGCTTTGCAtcttaagcc............TGCGAGAG...........GcCCGGAGTTCGAATCTCCGCTGCTCCA tRNA-Ala-TGC-1-1 Sc: 64.4
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGACATGGCGAAATGGC.A.TCGCGCTTGACTACGA.........................................ATCAAGAG...........AtTGCGGGTTCGAATCCCGTTGTCGCCT tRNA-Arg-ACG-1-1 Sc: 63.9 >>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGCGGGATGGCCTAATGGT.A.AGGCGTTGCTTTCCGGtccgagttctgcacttcctccaggtgctctcctttggatcaTGGCAAAG...........AtTGTGGGTTCGAGTCCCATTTCCGTCG tRNA-Arg-CCG-1-1 Sc: 54.5 >>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGCGTGGCCTAATGGTtA.AGGCACCAGTTTTCGGttgcgaagcgtaggctcagcttaaaat..............CACTGGGG...........AtTGGGAGTTCGAATCTTCCCGCGATCG tRNA-Arg-TCG-1-1 Sc: 48.6 >>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGGATTGGCGCAATGGT.A.GCGCGTGGCTCTCCTAtactggtaaattgattttatcatttctcagtggtcatca..AAGCCAAG...........GtTGTGGGTTCGAGTCCCATGTCTCTCG tRNA-Arg-CCT-1-1 Sc: 53.6 >>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCTCCGCTAGCTCAATGGT.A.GGGCGTCAGACTTCTAtttatggta................................ATCTGAAG...........GcTGTGGGTTCGAGTCCCACGCGGAGTG tRNA-Arg-TCT-1-1 Sc: 73.3
Asn tRNAs
Asp tRNAs
>>>>>>>...>>...........<<......>............................................................................<......>.>.........<.<..>>>>>.......<<<<<<<<<<<<. TCCTCGATGGTCTAGTGGTcA.TGAGTA.A.GTTCTTAtcacgtaagcaaatagttgtgcatcattgtctaacatgcaattcagtttccgcttgtcactaccaagtaACG...AGCGCG.......GGAGACCAGGGTTCGATTCCCTGTCGGGGAG tRNA-Asp-ATC-1-1 Sc: 33.1 >>>>>>>..>>>...........<<<.>>>>>............................................................................<<<<<...................>>>>>.......<<<<<<<<<<<<. TCCTCGATGGTCTAGTGGTcA.TGATTTCCGCTTGTCActacccagtaacgag......................................................CGCGGGAG...............ACCAGGGTTCGATTCCCTGTCGGGGAG tRNA-Asp-GTC-1-1 Sc: 63.5
Cys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GGATCGATAGCTCAGTGGTA.GAGCGAGAGATTGCAGtttgcacaccaatATCTCTAG...........GtCACGTGTTCGAACCACGTTCGGTCCT tRNA-Cys-GCA-1-1 Sc: 70.1
Gln tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>....................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTTTATAGTGTAGCGGTcA.GCACGTGAGATTCTGAtcatcccagaattTTCTCGAG...........ACCCCGGTTCGAATCCGGGTAAGACCT tRNA-Gln-CTG-1-1 Sc: 64.0 >>>>>>>..>>>...........<<<.>>>>>....................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTTTGTAGTGTAGCGGTcA.TCACACTGGATTTTGAtgcaaagaa....TTCCAGTA...........ACCCCGGTTCGAATCCGGGCAAGACCT tRNA-Gln-TTG-1-1 Sc: 62.1
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>...........................................................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCGATGTAGTGTAGTTGGTtA.ACATCTCTGTTTCTCAtatcactcttgatatt....................................CACAGAAG...........CCTCGGGTTCAAATCCCGGCGTCGGAA tRNA-Glu-CTC-1-1 Sc: 52.4 >.....>...>>>..........<<<..>>>>>...........................................................<<<<<...............>>>>>.......<<<<<<.....<. G.....ATGTTGTAGA.GGT.A.ACATATCAGTCTCTCAccatcgagttt.........................................CACTGATG...........CCCGGGGTTCGATTCCCCGTTA...CG tRNA-Glu-CTC-2-1 Sc: 25.7 >>>.>>>..>>>>..........<<<<.>>>>>...........................................................<<<<<...............>>>>>.......<<<<<<<<.<<<. TCCCCGATGGTGTAGC.GGT.A.ACATAACTGGTTTTCAaagaaaactctaagtgatctatatca..........................CCCAGTAG...........CTCCGGGTTCAACTCCCGGTCGAGGAA tRNA-Glu-TTC-1-1 Sc: 53.8 >>>>>>>..>>>>..........<<<<.>>.>>...........................................................<<.<<...............>>>>>.......<<<<<<<<<<<<. GCATCAGTGGTTTAGT.GGTgT.AAGTTTAACGTCAAGAccttccaggtcaattcaatattaacaataccacagaaaatccatcgttgccaTCGATGGG...........CCCCGCGTTCGATTCGCGGCTGATGCA tRNA-Glu-TTC-2-1 Sc: 36.0
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.....................................................................................................................................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GCATTGTTGGTTTAGTGGT.A.AAATCTGCCGTTGCCAgtcttccttaacaggtctactttcaatg..................................................................................................................TCGGCAGG...........CCCCGTGTTCGATTCACGGACAATGCA tRNA-Gly-GCC-1-1 Sc: 51.3 >>>>>.>..>>>>.........<<<<.>>>>>.....................................................................................................................................................<<<<<...............>>>>>.......<<<<<<.<<<<<. GGCGGTATAGTGCAGAGGTtA.GCATATCCCCCTCCCAccacagaaagttctcttgaggatctgaagaccactgtttatacaagaccataccaatccacggttgtcccgcggagatcttgtgatttcatgttgatagatttgtcttgagactgtcgtcgttgttgctacaactgtaggatCGGGGAAG...........ACCTTGGTTCGAATCCGAGTTCCGCCA tRNA-Gly-CCC-1-1 Sc: 56.3 >>>>>>>..>>>>.........<<<<.>>>>>.....................................................................................................................................................<<<<<...............>>>>>.......<<<<<<<<<<<<. GTCCCGTTGGTGTAGTGGT.A.ACATTATTGCCTTCCAtttcagttcgagtaattgtaagctt.....................................................................................................................AGCAATAG...........CCTCGGGTTCAATTCCCGAGCGGGACA tRNA-Gly-TCC-1-1 Sc: 57.9
His tRNAs
>>>>>.>..>>>>.........<<<<.>>>>>.............................................................................................................<<<<<................>>>>.......<<<<.<.<<<<<. GTTGGCATAGTGCAGTGGTtA.GCACGTCTCGTTGTGGaacgtttggaagcctcgacattgttaggacggaggaaacagatgaagcacctcctgcacgccctgtaaagtctgagtctaccagaacaacacactcacggttCCGAGGAA...........ACCTAGGTTCAAATCCTAATACCGACA tRNA-His-GTG-1-1 Sc: 41.6
Ile tRNAs
>>>>>>>..>................<.>...>............................................................................................<...<................>>>>>.......<<<<<.<<<<<<<. GGTCGCTTAGCTCAGGTtGGT.AACCCATCAACCCCAAGacatcgacaaataactaacttaacacctcacagttggttagacgtggtgctaatagcagtgtacaaataagtacctgaccctcaaCGCCAAG............GtCGCGAGTTCGACCCTCGT.AGTGACCA tRNA-Ile-AAT-1-1 Sc: 24.2 >>>>>>>..>>>>..........<<<<.>>>>..............................................................................................<<<<................>>>>>.......<<<<<.<<<<<<<. ATCCCTGTGACGCAGTT.GGTtAGCGTGTCGTTCTTATActgtatgcttgcatatagcatgaaatctttctcagag................................................ATGCGAAA...........GtCGCGAGTTCAAACCTCGC.CAGGGATA tRNA-Ile-TAT-1-1 Sc: 59.3
Leu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.........................................<<<<<..>>>..........<<<...>>>>>.......<<<<<.<<<<<<<. GGGAGGATGGCCGAGTTGGTtA.TGGCGTCAGGTTAAGGccaaagtcttgacactacgtt.............TCCTGATGGGAGC......AATCCCtCGTGGGTTCAAATCCCAC.TCCTCTCA tRNA-Leu-AAG-1-1 Sc: 60.9 >>>>>>>..>>>>..........<<<<.>>>>>.........................................<<<<<..>>............<<...>>>>>.......<<<<<.<<<<<<<. GGAGACGTGGCCGAGT.GGTtA.TGGCGCAAGTTTCAGGctaactggaacatgcttccgaggaagtacta...TACTTGT.GGGA........AACCG.CATGGGTTCGAATCCCAT.CGTCTTCA tRNA-Leu-CAG-1-1 Sc: 57.1 >>>>>>>..>>>............<<<.>>>>>.........................................<<<<<..>..............<...>>>>>.......<<<<<.<<<<<<<. GGGAGGATGGCCGAGC.GGTtA.AGGCGCTGTGTTTAGGtcatctattttacctgaatctatc..........CCGCAGTGGGA..........AACCtCGTGGGTTCGAATCCCAC.TCCTCTCA tRNA-Leu-TAG-1-1 Sc: 55.9 >>>>>>>..>>>>..........<<<<.>>>>>.........................................<<<<<..>>>..........<<<...>>>>>.......<<<<<.<<<<<<<. GGAGCGATGGCCGAGC.GGTtA.TGGCGTGGGACTCAAGtccaataaacttatccatcaccagatggatcgcgTTCTCAT.AGGGA......AACCTG.CGTGGGTTCAAATCCCAC.TCGCTTCA tRNA-Leu-CAA-1-1 Sc: 57.5
Lys tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>..................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGGCTAGCTCAATCGGT.AGAGCGTAAGACTCTTAccacactggtgATCTTAAG...........GcTGTGGGTTCGACCCCCACGTCGGGCT tRNA-Lys-CTT-1-1 Sc: 76.5 GCCCGGCTAGCTCAATCGGT.AGAGCGTAAGACTCTTAccacactggtgATCTTAAG...........GcTGTGGGTTCGACCCCCACGTCGGGCT tRNA-Lys-CTT-1-2 Sc: 76.5 >>>>>>>..>>.>.........<.<<.>>>>>..................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGCGTGGCACAATTGGTcAGCGCGTGAGACTTTTAtgtaaggt...ATCTCAAG...........GtTGAGAGTTCGAGCCTCTCCGCGGGCG tRNA-Lys-TTT-1-1 Sc: 72.2
Met tRNAs
>>>>>>>..>>>>............<<<<.>>>>>.........................................<<<<<................>>>>>.......<<<<<<<<<<<<. AGCAACATGGCGCA..GC.GGA.A.GCGCGCCGGGCTCATA..................................ACCCGGAG...........GtCAAGTGATCGAAACACTTTGTTGCTA tRNA-iMet-CAT-1-1 Sc: 62.0 >>>......>>>..............<<<.>>>>...........................................<<<<................>>>>>.......<<<<<....<<<. GCTAACTTTGTTCAaaGTCGGTtA.TGACGTCGGTCTCATAaataaaatatgatcctgtgcaacacacaggggctATCCGAAG...........GtCACGAGTTCGATTCTCGTCCGAGGCA tRNA-Met-CAT-1-1 Sc: 25.2
Phe tRNAs
>>>>>>>..>>.>.........<.<<.>.>>.............................................................................<<.<................>>>>>.......<<<<<<<<<<<<. TCCCCTGTGGCACAATTGGTcAGCGCGTAAGTgtCTCCAAaaattcagtcgactgttaatttctcaaactaacggtaaaaattaggtcagactgttaagacatttcATCTGGAG...........GtTCGTGGTTCGAGACCACGCGGGGGAG tRNA-Phe-AAA-1-1 Sc: 35.3
Pro tRNAs
>>>>>>>..>>>.................<<<....>>>>>......................................................................................<<<<<...................>>>>....>.......<<<<<.<<<<<<<. GCGCAATTGGTCTAGT.....GGT.A..TGATT...CTCGCTTAGGGttaactctaagtaaag...............................................................TGCGAGAG..............GcCCCAG....GTTCGAACCCTGG.ATTGCGCC tRNA-Pro-AGG-1-1 Sc: 62.8 >>>>>>>...>>.................<<.....>>>>>......................................................................................<<<<<...................>>>>....>.......<<<<<.<<<<<<<. GCCTCTATGGCGCAGT.....GGT.A..ACGGTaggTTGTACTAGGAattaattttgagctctggctgatttccttagcgtcgcacttgtactaccggaagaaatattcttcctccatccacatcaATGCGAAG..............AtCACAA....GTTCAATTCTTGT.TGGAGGCA tRNA-Pro-AGG-2-1 Sc: 44.7 >>>>>>>..>>...................<<.....>>>>......................................................................................<<<<....................>>>>....>.......<<<<<.<<<<<<<. GGCTCAATGGTCTAGGTtcgt.GTtA..TTACT...CTCGCCTATAAcgagatatacttataatgatacagtggtatgattgtcgcttcgggtatgcctttggttgaaaaagccagaaa.......TGTGACAG..............GtCTCGG....GTTCGAATCCCGA.TTGAGCCC tRNA-Pro-CGG-1-1 Sc: 29.4 >>>>>>>..>>>>...............<<<<......>>>......................................................................................<<<.....................>>>>....>.......<<<<<.<<<<<<<. GGCTGGATAGTTCAGT.....GGT.A..GAATT...CTTGCTTTGGGcatacaattctgaatgtaagaggtcctggggtaagtcttaatctgaagtcccacacatc....................AGCACTC.TCTA..........A.CCTGGcacaGTTCAAGTCCCAG.TTCAGCCC tRNA-Pro-TGG-1-1 Sc: 28.7
SeC tRNAs
Ser tRNAs
>>>>.>>..>>>............<<<.>>>>>...............................................<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<.<<<<. GACGCGGTGGCCGAGCGGTt.A.AGGCGTGTGACTAGAAtttgacacagttattctcggatattgtgtcatatactgagATCACATCTCTTC.....GGAGGCACAGGTTCAAATCCTGT.CCACGTCG tRNA-Ser-AGA-1-1 Sc: 63.3 >>>>>>>..>>>............<<<.>>>>>...............................................<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<. GACAGTTTGGCCGAGTGGTt.A.AGGCGACAGACTCGAActatggttgtgaatcgtcataatcatgatagtg.......ATCTGTTGGGTTC.....GCCCGCACAGGTTCAAATCCTGT.AGCTGTCG tRNA-Ser-CGA-1-1 Sc: 67.9 >>>>>>>..>>>............<<<.>>>>>...............................................<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<. GTCGGAATGGCCGAGTGGTctA.AGGCGTGTGACTTGAAttgagcttagttcattgtt.....................ATCACATCTCTTC.....GGAGGCACAGGTTCGAACCCTGT.TTCCGACG tRNA-Ser-TGA-1-1 Sc: 72.6 >>>>>>>..>>>............<<<.>>>>>...............................................<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<. GACACTTTGGCGGAGTGGTt.A.ACGCGCTGCCCTGCTAtagatcaaatgatttaagcggtatt...............AGGCAGTTCCTTC.....GGGAGCGCAGGTTCGAATCCTGC.AGGTGTCG tRNA-Ser-GCT-1-1 Sc: 63.7
Sup tRNAs
Thr tRNAs
>>>>>>>..>>.>.........<.<<.>>>>>...................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCTCTGTAGCCCAGTTGGTA.GAGCGCGGCACTAGTAcacagtacaagtg...............ATGCCGAG...........GtCTTGAGTTCGACTCTCAACGGAGGCA tRNA-Thr-AGT-1-1 Sc: 65.9 >>>>>>>..>>>...........<<<.>>>>>...................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGCTTGGCCCAGG.GGTA.AGGCGTGTCACTCGTAccagccttcaaccagaagtttcatagggATGACAAG...........AtCACAGGTTCGAATCCTGTAGCGGGCA tRNA-Thr-CGT-1-1 Sc: 69.0
Trp tRNAs
>>>>>>>..>>>>........<<<<.>...>......................................................................<...<................>>............<<<<<<<<<. GGACCCCTGGCGCAACGGTA.GCGCGTTCGACTCCAGcgatgcggtatcgaaaggttatctgtgtacgtatctttgctcaatggatgtaccttcattccaCTAATATGTTTC.......AtTGCAGTCAAAT.CAGGTGGGGTTCA tRNA-Trp-CCA-1-1 Sc: 26.2
Tyr tRNAs
>>>>>>>..>>>...........<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. CCCCTTGTGGTGTAGTTGGCtATCACGTTCGGCTGTAAtggaaactttgtaACCGAAAG...........GtCGCTGGCTCGATTCCGGCCGAGGGGA tRNA-Tyr-GTA-1-1 Sc: 64.1
Val tRNAs
>>>>>>>..>>>............<<<.>>>>>.....................................................................................................................................................................................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGGATGGTGTAGTTGGTcA.TCACGTCTGCTTAACA..............................................................................................................................................................................................................................................................CGCAGAAG...........GtCCTGGGTTCAAACCCCAGTCTGATCA tRNA-Val-AAC-1-1 Sc: 81.1 >>>>>>>..>>>............<<<.>>>>>.....................................................................................................................................................................................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GATCGACTGGTGTAGT.GGTtA.TCACGTGTCGTTCACAttacaatgtgtgcaaatat...........................................................................................................................................................................................................................................CCGACAAG...........GcCCTGAGTTCGATCCTCAGGTCGATCA tRNA-Val-CAC-1-1 Sc: 64.9 >>>>>>>..>>>............<<<.>>>>>.....................................................................................................................................................................................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. AGTTCCATAGTGTAGT.GGTtA.TCACGTTCCCTTTACAtccatctcatccgacag.............................................................................................................................................................................................................................................CGGGAAAG...........GtCCTGGGTTCGAACCCCAGTGGGACTA tRNA-Val-TAC-1-1 Sc: 67.4 >>>>>>>..>>>>..........<<<<.>>>>>.....................................................................................................................................................................................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGACGTGGTGCAGTCGGTgA.GCACATCCTCCCTACGggttgccaacctcaaagaagccgtcggtaccccttccgcccacagtccccatctatccccacttgtgtacaccggctcgggcccgtgctggggtgtgctgtttacaacattgagctggggtgtgcttttcacatcattgagctgggatgtgctgttcgcaacattgcctgggccgggagtccttgtgggggtatttgggatgtatgggggcggaaggggacaataccgacgcgcggacttgagtggcaaaggggTGAGGAAG...........A.CCTTGGTTCAAATCCAAGCGTCGCCA tRNA-Val-TAC-2-1 Sc: 46.3