tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 22:33:56 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         9
Seqs w/at least 1 hit:  7
Bases read:             29273723 (x2 for both strands)
Bases in tRNAs:         5837
tRNAs predicted:        52
Av. tRNA length:        112
Script CPU time:        2.81 s
Scan CPU time:          153.12 s
Scan speed:             382.4 Kbp/sec

First pass search(es) ended: Mon Aug 21 22:34:10 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     52
Infernal-confirmed tRNAs:     51
Bases scanned by Infernal:  6877
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.55 s
Infernal CPU time:            45.04 s
Scan speed:               152.7 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 22:34:58 PDT 2017

Overall scan speed: 290529.2 bp/sec