tRNA Gene Summary

Overview
High confidence set 549
tRNAs decoding standard 20 AA 548
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 36
Unexpected anticodons 15
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 392312
Secondary filter (low feature scores, possible rep. element) 10552
Tertiary filter (excessive isotype copies, possible rep. element) 126

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 40)
Arg TCT
5
Leu CAA
6
Lys CTT
1
Ile TAT
13
Tyr GTA
15
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
18
GGC
 
CGC
6
TGC
13
37
GlyACC
 
GCC
13
CCC
7
TCC
9
29
ProAGG
14
GGG
 
CGG
5
TGG
11
30
ThrAGT
18
GGT
 
CGT
5
TGT
8
31
ValAAC
14
GAC
 
CAC
21
TAC
5
40
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
 
CGA
4
TGA
4
ACT
 
GCT
19
 
 
 
 
38
ArgACG
8
GCG
 
CCG
4
TCG
25
 
 
 
 
CCT
7
TCT
6
50
LeuAAG
9
GAG
 
CAG
5
TAG
8
 
 
 
 
CAA
6
TAA
4
32
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
17
 
 
 
 
17
AsnATT
 
GTT
23
 
 
 
 
23
Lys 
 
 
 
CTT
38
TTT
13
51
AspATC
 
GTC
13
 
 
 
 
13
Glu 
 
 
 
CTC
8
TTC
13
21
HisATG
 
GTG
16
 
 
 
 
16
Gln 
 
 
 
CTG
17
TTG
5
22
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
13
GAT
 
CAT
 
TAT
13
26
iMet/Met 
 
 
 
CAT
12/10
 
 
22
TyrATA
 
GTA
15
 
 
 
 
15
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
23
 
 
 
 
23
Trp 
 
 
 
CCA
12
 
 
12
SelCys 
 
 
 
 
 
TCA
1
1