tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Wed Jan 23 00:12:18 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         4507
Seqs w/at least 1 hit:  467
Bases read:             2521846836 (x2 for both strands)
Bases in tRNAs:         53431592
tRNAs predicted:        624608
Av. tRNA length:        85
Script CPU time:        611.10 s
Scan CPU time:          40979.56 s
Scan speed:             123.1 Kbp/sec

First pass search(es) ended: Wed Jan 23 01:11:45 PST 2019

Infernal Stats:
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Candidate tRNAs read:     624608
Infernal-confirmed tRNAs:     403601
Bases scanned by Infernal:  65923752
% seq scanned by Infernal:  1.3 %
Script CPU time:          2919.31 s
Infernal CPU time:            293167.96 s
Scan speed:               224.9 bp/sec

Infernal analysis of tRNAs ended: Sat Jan 26 09:31:52 PST 2019

Overall scan speed: 14936.4 bp/sec