tRNA Gene Summary

Overview
High confidence set 549
tRNAs decoding standard 20 AA 548
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 36
Unexpected anticodons 15
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 392312
Secondary filter (low feature scores, possible rep. element) 10552
Tertiary filter (excessive isotype copies, possible rep. element) 126

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 166526)
Ala AGC
358
Ala GGC
125
Ala CGC
19
Ala TGC
40
Gly ACC
15
Gly GCC
137
Gly CCC
95
Gly TCC
850
Pro AGG
21
Pro GGG
24
Pro CGG
216
Pro TGG
1137
Thr AGT
8
Thr GGT
31
Thr CGT
191
Thr TGT
73
Val AAC
13
Val GAC
40
Val CAC
66
Val TAC
13
Ser AGA
5
Ser GGA
24
Ser CGA
178
Ser TGA
427
Ser ACT
31
Ser GCT
34
Arg ACG
64
Arg GCG
93
Arg CCG
263
Arg TCG
19292
Arg CCT
1181
Arg TCT
771
Leu AAG
18
Leu GAG
41
Leu CAG
1452
Leu TAG
559
Leu CAA
122
Leu TAA
158
Phe AAA
4
Phe GAA
5
Asn ATT
178
Asn GTT
458
Lys CTT
24534
Lys TTT
1251
Asp ATC
29
Asp GTC
43
Glu CTC
1402
Glu TTC
287
His ATG
47
His GTG
104
Gln CTG
902
Gln TTG
9083
Ile AAT
6
Ile GAT
14
Ile TAT
34
Met CAT
227
Tyr ATA
9
Tyr GTA
24
Supres TCA
97967
Supres CTA
281
Supres TTA
843
Cys ACA
107
Cys GCA
195
Trp CCA
307
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
2835
GGC
199
CGC
35
TGC
124
3193
GlyACC
127
GCC
177
CCC
224
TCC
3697
4225
ProAGG
91
GGG
71
CGG
381
TGG
4707
5250
ThrAGT
41
GGT
41
CGT
337
TGT
197
616
ValAAC
56
GAC
50
CAC
145
TAC
54
305
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
29
GGA
42
CGA
793
TGA
1064
ACT
98
GCT
107
 
 
 
 
2133
ArgACG
4918
GCG
554
CCG
1289
TCG
90971
 
 
 
 
CCT
2297
TCT
3414
103443
LeuAAG
84
GAG
90
CAG
1809
TAG
2393
 
 
 
 
CAA
393
TAA
481
5250
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
16
GAA
43
 
 
 
 
59
AsnATT
342
GTT
866
 
 
 
 
1208
Lys 
 
 
 
CTT
45221
TTT
2474
47695
AspATC
70
GTC
71
 
 
 
 
141
Glu 
 
 
 
CTC
2418
TTC
639
3057
HisATG
1030
GTG
557
 
 
 
 
1587
Gln 
 
 
 
CTG
2169
TTG
48137
50306
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
30
GAT
25
CAT
 
TAT
103
158
iMet/Met 
 
 
 
CAT
16/492
 
 
508
TyrATA
57
GTA
79
 
 
 
 
136
Supres 
 
TCA
164230
CTA
554
TTA
3184
167968
CysACA
530
GCA
751
 
 
 
 
1281
Trp 
 
 
 
CCA
987
 
 
987
SelCys 
 
 
 
 
 
TCA
1
1