tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 13:21:38 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1412
Seqs w/at least 1 hit:  18
Bases read:             63354419 (x2 for both strands)
Bases in tRNAs:         7141
tRNAs predicted:        82
Av. tRNA length:        87
Script CPU time:        9.16 s
Scan CPU time:          434.75 s
Scan speed:             291.5 Kbp/sec

First pass search(es) ended: Wed Aug 23 13:28:24 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     82
Infernal-confirmed tRNAs:     81
Bases scanned by Infernal:  8781
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.76 s
Infernal CPU time:            58.25 s
Scan speed:               150.7 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 13:29:47 PDT 2017

Overall scan speed: 251946.3 bp/sec