tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 287
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 2
Predicted pseudogenes 9
Total tRNAs 298
Intron Summary (tRNAs with introns: 190)
Ala AGC
13
Ala GGC
1
Ala CGC
3
Ala TGC
3
Gly GCC
14
Pro AGG
10
Pro CGG
2
Thr AGT
4
Thr GGT
1
Val CAC
1
Val TAC
1
Ser CGA
3
Ser TGA
2
Ser GCT
6
Arg TCG
8
Arg CCT
1
Leu AAG
11
Leu CAG
5
Leu TAG
2
Leu CAA
3
Leu TAA
2
Phe GAA
10
Asn GTT
8
Lys CTT
13
Lys TTT
2
Glu CTC
14
Glu TTC
4
His GTG
8
Gln TTG
4
Ile AAT
10
Ile TAT
1
Met CAT
5
Tyr GTA
10
Trp CCA
5
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 11938

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
13
GGC
1
CGC
3
TGC
4
21
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
14
CCC
1
TCC
4
19
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
10
GGG
 
CGG
2
TGG
3
15
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
11
GGT
1
CGT
2
TGT
4
18
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
13
GAC
 
CAC
2
TAC
3
18
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
 
CGA
3
TGA
3
ACT
 
GCT
6
 
 
 
 
22
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
10
GCG
 
CCG
1
TCG
8
 
 
 
 
CCT
3
TCT
2
24
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
11
GAG
 
CAG
5
TAG
2
 
 
 
 
CAA
3
TAA
3
24
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
10
 
 
 
 
10
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
9
 
 
 
 
9
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
13
TTT
3
16
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
13
 
 
 
 
13
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
14
TTC
5
19
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
10
 
 
 
 
10
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
8
TTG
4
12
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
10
GAT
 
 
 
TAT
1
11
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
4/9
 
 
13
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
10
 
 
 
 
10
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
5
 
 
5
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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