tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 00:19:49 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         418
Seqs w/at least 1 hit:  21
Bases read:             49359289 (x2 for both strands)
Bases in tRNAs:         27400
tRNAs predicted:        312
Av. tRNA length:        87
Script CPU time:        5.81 s
Scan CPU time:          274.82 s
Scan speed:             359.2 Kbp/sec

First pass search(es) ended: Tue Aug 22 00:22:14 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     312
Infernal-confirmed tRNAs:     310
Bases scanned by Infernal:  33629
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.57 s
Infernal CPU time:            214.04 s
Scan speed:               157.1 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 00:26:02 PDT 2017

Overall scan speed: 198533.1 bp/sec