tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 00:38:22 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         985
Seqs w/at least 1 hit:  82
Bases read:             52914414 (x2 for both strands)
Bases in tRNAs:         28499
tRNAs predicted:        310
Av. tRNA length:        91
Script CPU time:        8.17 s
Scan CPU time:          348.74 s
Scan speed:             303.5 Kbp/sec

First pass search(es) ended: Tue Aug 22 00:44:17 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     310
Infernal-confirmed tRNAs:     305
Bases scanned by Infernal:  34699
% seq scanned by Infernal:  0.0 %
Script CPU time:          4.04 s
Infernal CPU time:            246.15 s
Scan speed:               141.0 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 00:49:13 PDT 2017

Overall scan speed: 174318.6 bp/sec