tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 298
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 5
Total tRNAs 305
Intron Summary (tRNAs with introns: 211)
Ala AGC
14
Ala CGC
3
Ala TGC
3
Gly GCC
15
Pro AGG
12
Pro CGG
2
Thr AGT
4
Val GAC
1
Val CAC
1
Val TAC
1
Ser CGA
4
Ser TGA
2
Ser GCT
7
Arg TCG
9
Arg CCT
1
Leu AAG
13
Leu CAG
5
Leu TAG
2
Leu CAA
4
Leu TAA
2
Phe GAA
9
Asn GTT
8
Lys CTT
17
Lys TTT
2
Asp GTC
1
Glu CTC
18
Glu TTC
4
His GTG
7
Gln TTG
4
Ile AAT
12
Ile TAT
1
Met CAT
5
Tyr ATA
1
Tyr GTA
10
Supres TCA
1
Cys ACA
1
Trp CCA
5
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 57034

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
14
GGC
 
CGC
3
TGC
3
20
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
15
CCC
1
TCC
3
19
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
12
GGG
 
CGG
2
TGG
3
17
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
11
GGT
 
CGT
2
TGT
4
17
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
13
GAC
1
CAC
3
TAC
2
19
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
 
CGA
4
TGA
2
ACT
 
GCT
7
 
 
 
 
23
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
10
GCG
 
CCG
1
TCG
9
 
 
 
 
CCT
3
TCT
 
23
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
13
GAG
 
CAG
5
TAG
2
 
 
 
 
CAA
4
TAA
2
26
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
9
 
 
 
 
9
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
8
 
 
 
 
8
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
17
TTT
2
19
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
15
 
 
 
 
15
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
18
TTC
4
22
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
7
 
 
 
 
7
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
8
TTG
4
12
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
12
GAT
 
 
 
TAT
1
13
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
4/7
 
 
11
 
 
 
 
ATG
0
 
 
0%
TyrATA
2
GTA
10
 
 
 
 
12
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
1
GCA
5
 
 
 
 
6
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
5
 
 
5
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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