tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 13:47:45 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         634
Seqs w/at least 1 hit:  102
Bases read:             39945776 (x2 for both strands)
Bases in tRNAs:         20028
tRNAs predicted:        243
Av. tRNA length:        82
Script CPU time:        5.55 s
Scan CPU time:          254.91 s
Scan speed:             313.4 Kbp/sec

First pass search(es) ended: Wed Aug 23 13:52:04 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     243
Infernal-confirmed tRNAs:     237
Bases scanned by Infernal:  24879
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.84 s
Infernal CPU time:            195.97 s
Scan speed:               127.0 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 13:57:06 PDT 2017

Overall scan speed: 173953.3 bp/sec