tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 220
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 6
Predicted pseudogenes 11
Total tRNAs 237
Intron Summary (tRNAs with introns: 139)
Ala AGC
8
Ala TGC
1
Gly TCC
3
Pro AGG
10
Pro CGG
4
Pro TGG
2
Thr GGT
1
Thr CGT
1
Thr TGT
1
Val AAC
1
Val CAC
3
Ser AGA
1
Ser CGA
4
Ser TGA
2
Ser GCT
5
Arg ACG
8
Arg GCG
1
Arg CCG
2
Arg TCG
3
Arg TCT
2
Leu AAG
8
Leu CAG
1
Leu TAG
1
Leu CAA
3
Leu TAA
1
Phe GAA
3
Asn GTT
5
Lys CTT
14
Lys TTT
1
Asp GTC
5
His GTG
7
Gln CTG
8
Gln TTG
3
Ile TAT
2
iMet CAT
1
Met CAT
4
Tyr GTA
5
Trp CCA
4
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 26587

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
8
GGC
 
CGC
7
TGC
2
17
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
10
CCC
4
TCC
5
19
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
10
GGG
 
CGG
4
TGG
2
16
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
5
GGT
1
CGT
5
TGT
2
13
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
 
CAC
3
TAC
2
12
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
5
GGA
 
CGA
5
TGA
3
ACT
 
GCT
5
 
 
 
 
18
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
8
GCG
1
CCG
2
TCG
3
 
 
 
 
CCT
2
TCT
3
19
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
8
GAG
 
CAG
3
TAG
1
 
 
 
 
CAA
3
TAA
2
17
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
4
 
 
 
 
4
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
6
 
 
 
 
6
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
15
TTT
2
17
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
7
 
 
 
 
7
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
13
TTC
3
16
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
7
 
 
 
 
7
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
8
TTG
3
11
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
4
GAT
 
 
 
TAT
2
6
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
5/6
 
 
11
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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