tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.2 (February 2019) scan results 
Started: Thu Feb 21 11:42:19 PST 2019

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         1190
Seqs w/at least 1 hit:  28
Bases read:             978491270 (x2 for both strands)
Bases in tRNAs:         102177
tRNAs predicted:        1364
Av. tRNA length:        74
Script CPU time:        87.76 s
Scan CPU time:          4222.78 s
Scan speed:             463.4 Kbp/sec

First pass search(es) ended: Thu Feb 21 11:52:53 PST 2019

Infernal Stats:
-----------
Candidate tRNAs read:     1364
Infernal-confirmed tRNAs:     1075
Bases scanned by Infernal:  129457
% seq scanned by Infernal:  0.0 %
Script CPU time:          6.81 s
Infernal CPU time:            661.06 s
Scan speed:               195.8 bp/sec

Infernal analysis of tRNAs ended: Thu Feb 21 12:07:55 PST 2019

Overall scan speed: 393093.9 bp/sec