tRNA Gene Summary

Overview
High confidence set 697
tRNAs decoding standard 20 AA 697
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 3
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 244
Secondary filter (low feature scores, possible rep. element) 131

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 46)
Val GAC
1
Ser GCT
1
Lys TTT
1
Ile AAT
1
Met CAT
19
Tyr GTA
21
Supres TTA
1
Cys GCA
1

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 1207
Number of Codons: 495060

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
25
GGC
 
CGC
9
TGC
27
61
GCT
2.67
GCC
1.62
GCG
0.63
GCA
2.14
7.06%
GlyACC
 
GCC
31
CCC
9
TCC
19
59
GGT
2.09
GGC
1.34
GGG
1.3
GGA
2.23
6.96%
ProAGG
23
GGG
 
CGG
5
TGG
28
56
CCT
1.89
CCC
1.01
CCG
0.47
CCA
1.91
5.28%
ThrAGT
14
GGT
2
CGT
4
TGT
12
32
ACT
1.71
ACC
1.43
ACG
0.43
ACA
1.49
5.06%
ValAAC
26
GAC
4
CAC
14
TAC
10
54
GTT
2.61
GTC
1.19
GTG
2.14
GTA
0.77
6.71%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
15
GGA
2
CGA
6
TGA
14
ACT
3
GCT
35
 
 
 
 
75
TCT
1.84
TCC
1.29
TCG
0.48
TCA
1.56
AGT
1.26
AGC
1.13
 
 
 
 
7.56%
ArgACG
16
GCG
1
CCG
6
TCG
9
 
 
 
 
CCT
15
TCT
19
66
CGT
0.66
CGC
0.62
CGG
0.31
CGA
0.41
 
 
 
 
AGG
1.33
AGA
1.48
4.81%
LeuAAG
17
GAG
 
CAG
8
TAG
13
 
 
 
 
CAA
20
TAA
10
68
CTT
2.39
CTC
1.71
CTG
1.27
CTA
0.85
 
 
 
 
TTG
2.29
TTA
0.92
9.43%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
3
GAA
24
 
 
 
 
27
TTT
2.12
TTC
2.12
 
 
 
 
4.24%
AsnATT
2
GTT
28
 
 
 
 
30
AAT
2.24
AAC
2.28
 
 
 
 
4.52%
Lys 
 
 
 
CTT
30
TTT
24
54
 
 
 
 
AAG
3.59
AAA
2.69
6.28%
AspATC
3
GTC
48
 
 
 
 
51
GAT
3.24
GAC
2.04
 
 
 
 
5.28%
Glu 
 
 
 
CTC
26
TTC
20
46
 
 
 
 
GAG
3.32
GAA
3.32
6.64%
HisATG
 
GTG
18
 
 
 
 
18
CAT
1.4
CAC
1.16
 
 
 
 
2.56%
Gln 
 
 
 
CTG
16
TTG
17
33
 
 
 
 
CAG
1.62
CAA
2.05
3.67%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
207
GAT
3
CAT
 
TAT
9
219
ATT
2.51
ATC
1.63
 
 
ATA
1.29
5.43%
iMet/Met 
 
 
 
CAT
14/26
 
 
40
 
 
 
 
ATG
2.27
 
 
2.27%
TyrATA
1
GTA
24
 
 
 
 
25
TAT
1.57
TAC
1.49
 
 
 
 
3.06%
Supres 
 
TCA
1
CTA
 
TTA
2
3
Stop 
 
TGA
0.1
TAG
0.05
TAA
0.09
0.24%
CysACA
2
GCA
18
 
 
 
 
20
TGT
0.81
TGC
0.8
 
 
 
 
1.61%
Trp 
 
 
 
CCA
20
 
 
20
 
 
 
 
TGG
1.3
 
 
1.3%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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