tRNA Gene Summary

Overview
High confidence set 697
tRNAs decoding standard 20 AA 697
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 3
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 244
Secondary filter (low feature scores, possible rep. element) 131

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 38)
Met CAT
18
Tyr GTA
20

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 1207
Number of Codons: 495060

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
24
GGC
 
CGC
8
TGC
17
49
GCT
2.67
GCC
1.62
GCG
0.63
GCA
2.14
7.06%
GlyACC
 
GCC
29
CCC
9
TCC
18
56
GGT
2.09
GGC
1.34
GGG
1.3
GGA
2.23
6.96%
ProAGG
19
GGG
 
CGG
5
TGG
24
48
CCT
1.89
CCC
1.01
CCG
0.47
CCA
1.91
5.28%
ThrAGT
9
GGT
 
CGT
4
TGT
10
23
ACT
1.71
ACC
1.43
ACG
0.43
ACA
1.49
5.06%
ValAAC
21
GAC
 
CAC
13
TAC
9
43
GTT
2.61
GTC
1.19
GTG
2.14
GTA
0.77
6.71%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
15
GGA
 
CGA
6
TGA
11
ACT
 
GCT
23
 
 
 
 
55
TCT
1.84
TCC
1.29
TCG
0.48
TCA
1.56
AGT
1.26
AGC
1.13
 
 
 
 
7.56%
ArgACG
13
GCG
 
CCG
5
TCG
9
 
 
 
 
CCT
13
TCT
14
54
CGT
0.66
CGC
0.62
CGG
0.31
CGA
0.41
 
 
 
 
AGG
1.33
AGA
1.48
4.81%
LeuAAG
16
GAG
 
CAG
7
TAG
9
 
 
 
 
CAA
13
TAA
8
53
CTT
2.39
CTC
1.71
CTG
1.27
CTA
0.85
 
 
 
 
TTG
2.29
TTA
0.92
9.43%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
21
 
 
 
 
21
TTT
2.12
TTC
2.12
 
 
 
 
4.24%
AsnATT
 
GTT
22
 
 
 
 
22
AAT
2.24
AAC
2.28
 
 
 
 
4.52%
Lys 
 
 
 
CTT
21
TTT
19
40
 
 
 
 
AAG
3.59
AAA
2.69
6.28%
AspATC
 
GTC
32
 
 
 
 
32
GAT
3.24
GAC
2.04
 
 
 
 
5.28%
Glu 
 
 
 
CTC
24
TTC
18
42
 
 
 
 
GAG
3.32
GAA
3.32
6.64%
HisATG
 
GTG
17
 
 
 
 
17
CAT
1.4
CAC
1.16
 
 
 
 
2.56%
Gln 
 
 
 
CTG
13
TTG
12
25
 
 
 
 
CAG
1.62
CAA
2.05
3.67%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
25
GAT
 
CAT
 
TAT
8
33
ATT
2.51
ATC
1.63
 
 
ATA
1.29
5.43%
iMet/Met 
 
 
 
CAT
14/19
 
 
33
 
 
 
 
ATG
2.27
 
 
2.27%
TyrATA
 
GTA
20
 
 
 
 
20
TAT
1.57
TAC
1.49
 
 
 
 
3.06%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.05
TAA
0.09
0.24%
CysACA
 
GCA
14
 
 
 
 
14
TGT
0.81
TGC
0.8
 
 
 
 
1.61%
Trp 
 
 
 
CCA
17
 
 
17
 
 
 
 
TGG
1.3
 
 
1.3%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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