tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Wed Jan 10 18:20:33 PST 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1033
Seqs w/at least 1 hit:  23
Bases read:             761406121 (x2 for both strands)
Bases in tRNAs:         96696
tRNAs predicted:        1292
Av. tRNA length:        74
Script CPU time:        77.51 s
Scan CPU time:          3225.33 s
Scan speed:             472.1 Kbp/sec

First pass search(es) ended: Wed Jan 10 18:30:07 PST 2018

Infernal Stats:
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Candidate tRNAs read:     1292
Infernal-confirmed tRNAs:     1097
Bases scanned by Infernal:  122536
% seq scanned by Infernal:  0.0 %
Script CPU time:          8.13 s
Infernal CPU time:            723.20 s
Scan speed:               169.4 bp/sec

Infernal analysis of tRNAs ended: Wed Jan 10 18:45:32 PST 2018

Overall scan speed: 377478.5 bp/sec