tRNA Gene Summary

Overview
High confidence set 715
tRNAs decoding standard 20 AA 715
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 17
Unexpected anticodons 5
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 110
Secondary filter (low feature scores, possible rep. element) 250

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 53)
Pro TGG
1
Ser TGA
2
Ser GCT
3
Arg CCT
1
Phe GAA
3
Asn ATT
1
Lys TTT
1
Asp GTC
2
Gln CTG
1
Met CAT
17
Tyr GTA
20
Supres TTA
1

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 13
Number of Codons: 4875

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
28
GGC
 
CGC
10
TGC
20
58
GCT
2.87
GCC
1.58
GCG
0.84
GCA
1.95
7.24%
GlyACC
 
GCC
35
CCC
11
TCC
23
69
GGT
2.07
GGC
1.09
GGG
1.87
GGA
1.89
6.92%
ProAGG
20
GGG
 
CGG
13
TGG
31
64
CCT
2.19
CCC
1.25
CCG
0.88
CCA
1.74
6.06%
ThrAGT
17
GGT
3
CGT
5
TGT
13
38
ACT
1.66
ACC
1.21
ACG
0.39
ACA
1.33
4.59%
ValAAC
29
GAC
15
CAC
11
TAC
12
67
GTT
3.18
GTC
1.35
GTG
2.01
GTA
0.86
7.4%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
24
GGA
9
CGA
10
TGA
19
ACT
 
GCT
37
 
 
 
 
99
TCT
1.66
TCC
0.96
TCG
0.9
TCA
1.21
AGT
1.13
AGC
1.33
 
 
 
 
7.19%
ArgACG
26
GCG
2
CCG
4
TCG
9
 
 
 
 
CCT
14
TCT
20
75
CGT
0.68
CGC
0.35
CGG
0.68
CGA
0.53
 
 
 
 
AGG
1.13
AGA
0.98
4.35%
LeuAAG
19
GAG
 
CAG
10
TAG
12
 
 
 
 
CAA
29
TAA
12
82
CTT
1.76
CTC
1.44
CTG
1.19
CTA
1.05
 
 
 
 
TTG
2.36
TTA
1.58
9.38%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
43
 
 
 
 
43
TTT
3.04
TTC
2.17
 
 
 
 
5.21%
AsnATT
7
GTT
43
 
 
 
 
50
AAT
2.3
AAC
2.09
 
 
 
 
4.39%
Lys 
 
 
 
CTT
18
TTT
32
50
 
 
 
 
AAG
3.57
AAA
2.93
6.5%
AspATC
2
GTC
55
 
 
 
 
57
GAT
3.53
GAC
1.5
 
 
 
 
5.03%
Glu 
 
 
 
CTC
30
TTC
27
57
 
 
 
 
GAG
2.63
GAA
3.36
5.99%
HisATG
3
GTG
24
 
 
 
 
27
CAT
1.99
CAC
0.72
 
 
 
 
2.71%
Gln 
 
 
 
CTG
11
TTG
17
28
 
 
 
 
CAG
1.07
CAA
1.81
2.88%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
30
GAT
2
CAT
 
TAT
12
44
ATT
2.69
ATC
1.68
 
 
ATA
1.13
5.5%
iMet/Met 
 
 
 
CAT
16/50
 
 
66
 
 
 
 
ATG
2.32
 
 
2.32%
TyrATA
4
GTA
28
 
 
 
 
32
TAT
1.76
TAC
0.94
 
 
 
 
2.7%
Supres 
 
TCA
 
CTA
7
TTA
1
8
Stop 
 
TGA
0.21
TAG
0.02
TAA
0.04
0.27%
CysACA
7
GCA
25
 
 
 
 
32
TGT
0.96
TGC
0.84
 
 
 
 
1.8%
Trp 
 
 
 
CCA
31
 
 
31
 
 
 
 
TGG
1.56
 
 
1.56%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-