tRNA Gene Summary

Overview
High confidence set 715
tRNAs decoding standard 20 AA 715
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 17
Unexpected anticodons 5
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 110
Secondary filter (low feature scores, possible rep. element) 250

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 39)
Phe GAA
3
Met CAT
17
Tyr GTA
19

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 13
Number of Codons: 4875

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
24
GGC
 
CGC
8
TGC
18
50
GCT
2.87
GCC
1.58
GCG
0.84
GCA
1.95
7.24%
GlyACC
 
GCC
28
CCC
9
TCC
18
55
GGT
2.07
GGC
1.09
GGG
1.87
GGA
1.89
6.92%
ProAGG
18
GGG
 
CGG
5
TGG
22
45
CCT
2.19
CCC
1.25
CCG
0.88
CCA
1.74
6.06%
ThrAGT
15
GGT
 
CGT
5
TGT
11
31
ACT
1.66
ACC
1.21
ACG
0.39
ACA
1.33
4.59%
ValAAC
25
GAC
 
CAC
10
TAC
12
47
GTT
3.18
GTC
1.35
GTG
2.01
GTA
0.86
7.4%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
19
GGA
 
CGA
5
TGA
11
ACT
 
GCT
26
 
 
 
 
61
TCT
1.66
TCC
0.96
TCG
0.9
TCA
1.21
AGT
1.13
AGC
1.33
 
 
 
 
7.19%
ArgACG
10
GCG
 
CCG
4
TCG
9
 
 
 
 
CCT
8
TCT
11
42
CGT
0.68
CGC
0.35
CGG
0.68
CGA
0.53
 
 
 
 
AGG
1.13
AGA
0.98
4.35%
LeuAAG
18
GAG
 
CAG
7
TAG
8
 
 
 
 
CAA
14
TAA
9
56
CTT
1.76
CTC
1.44
CTG
1.19
CTA
1.05
 
 
 
 
TTG
2.36
TTA
1.58
9.38%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
26
 
 
 
 
26
TTT
3.04
TTC
2.17
 
 
 
 
5.21%
AsnATT
 
GTT
26
 
 
 
 
26
AAT
2.3
AAC
2.09
 
 
 
 
4.39%
Lys 
 
 
 
CTT
17
TTT
24
41
 
 
 
 
AAG
3.57
AAA
2.93
6.5%
AspATC
 
GTC
36
 
 
 
 
36
GAT
3.53
GAC
1.5
 
 
 
 
5.03%
Glu 
 
 
 
CTC
19
TTC
19
38
 
 
 
 
GAG
2.63
GAA
3.36
5.99%
HisATG
 
GTG
14
 
 
 
 
14
CAT
1.99
CAC
0.72
 
 
 
 
2.71%
Gln 
 
 
 
CTG
10
TTG
12
22
 
 
 
 
CAG
1.07
CAA
1.81
2.88%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
28
GAT
 
CAT
 
TAT
8
36
ATT
2.69
ATC
1.68
 
 
ATA
1.13
5.5%
iMet/Met 
 
 
 
CAT
15/18
 
 
33
 
 
 
 
ATG
2.32
 
 
2.32%
TyrATA
 
GTA
19
 
 
 
 
19
TAT
1.76
TAC
0.94
 
 
 
 
2.7%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.21
TAG
0.02
TAA
0.04
0.27%
CysACA
 
GCA
19
 
 
 
 
19
TGT
0.96
TGC
0.84
 
 
 
 
1.8%
Trp 
 
 
 
CCA
18
 
 
18
 
 
 
 
TGG
1.56
 
 
1.56%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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