tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 01:54:48 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         11193
Seqs w/at least 1 hit:  123
Bases read:             51674499 (x2 for both strands)
Bases in tRNAs:         13957
tRNAs predicted:        133
Av. tRNA length:        104
Script CPU time:        19.90 s
Scan CPU time:          1877.02 s
Scan speed:             55.1 Kbp/sec

First pass search(es) ended: Tue Aug 22 02:52:40 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     133
Infernal-confirmed tRNAs:     128
Bases scanned by Infernal:  16557
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.26 s
Infernal CPU time:            168.75 s
Scan speed:               98.1 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 02:56:52 PDT 2017

Overall scan speed: 49952.9 bp/sec