tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 110
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 5
Predicted pseudogenes 12
Total tRNAs 128
Intron Summary (tRNAs with introns: 107)
Ala AGC
3
Ala CGC
2
Ala TGC
1
Gly ACC
2
Gly GCC
4
Gly CCC
3
Gly TCC
3
Pro AGG
4
Pro CGG
2
Pro TGG
1
Thr AGT
4
Thr CGT
2
Thr TGT
2
Val AAC
4
Val CAC
3
Val TAC
2
Ser AGA
3
Ser CGA
2
Ser TGA
2
Ser GCT
2
Arg ACG
2
Arg GCG
1
Arg CCG
2
Arg CCT
2
Arg TCT
1
Leu AAG
4
Leu CAG
2
Leu TAG
2
Leu TAA
2
Phe AAA
2
Phe GAA
4
Asn GTT
4
Lys CTT
3
Lys TTT
2
Asp GTC
2
Glu CTC
4
Glu TTC
1
His GTG
2
Gln CTG
3
Gln TTG
1
Ile AAT
1
Ile TAT
3
Tyr GTA
3
Supres TTA
1
Cys GCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 358178

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
3
GGC
 
CGC
2
TGC
2
7
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
2
GCC
4
CCC
3
TCC
4
13
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
4
GGG
 
CGG
2
TGG
1
7
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
4
GGT
 
CGT
2
TGT
2
8
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
4
GAC
 
CAC
3
TAC
3
10
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
3
GGA
 
CGA
2
TGA
2
ACT
 
GCT
2
 
 
 
 
9
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
3
GCG
1
CCG
2
TCG
 
 
 
 
 
CCT
3
TCT
2
11
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
4
GAG
 
CAG
2
TAG
2
 
 
 
 
CAA
 
TAA
2
10
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
2
GAA
5
 
 
 
 
7
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
5
 
 
 
 
5
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
3
TTT
4
7
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
4
TTC
2
6
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
3
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
3
TTG
1
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
3
GAT
 
 
 
TAT
3
6
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
-/2
 
 
0
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
1
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
 
 
 
0
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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