tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (Sept 2017) scan results (on host zam.soe.ucsc.edu)
Started: Sun Nov 19 21:49:06 PST 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         92
Seqs w/at least 1 hit:  32
Bases read:             3137144693 (x2 for both strands)
Bases in tRNAs:         90270
tRNAs predicted:        1164
Av. tRNA length:        77
Script CPU time:        468.97 s
Scan CPU time:          18803.36 s
Scan speed:             333.7 Kbp/sec

First pass search(es) ended: Sun Nov 19 22:07:58 PST 2017

Infernal Stats:
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Candidate tRNAs read:     1164
Infernal-confirmed tRNAs:     829
Bases scanned by Infernal:  113550
% seq scanned by Infernal:  0.0 %
Script CPU time:          7.02 s
Infernal CPU time:            561.01 s
Scan speed:               202.4 bp/sec

Infernal analysis of tRNAs ended: Sun Nov 19 22:21:06 PST 2017

Overall scan speed: 316238.7 bp/sec